Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq387 105 6e-18
>seq387
Length=80018
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 25211 ATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGAT 25270
||||| | ||||||||| | | |||||| ||||| | || || || || ||
Sbjct 1187 ATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAGGCCAAGATCCAAGAC 1128
Query 25271 AAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330
|| |||||||| || || ||||||||| ||||||| | || ||| |||||||| ||||||
Sbjct 1127 AAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAACAACTTGAAGAT 1068
Query 25331 GATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371
| ||| | | |||||||||||||||||| || |||||
Sbjct 1067 GGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 1027
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | ||||| ||| | || || | ||||||||| | | |
Sbjct 2011 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1952
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || || || || || || |||||||| || || || |||
Sbjct 1951 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1892
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || | |||| || ||| || ||||| ||||| | ||| | | ||||||||||
Sbjct 1891 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1832
Query 25355 ATTCAAAAAGAATCCAC 25371
|| ||||| || |||||
Sbjct 1831 ATCCAAAAGGAGTCCAC 1815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445087718020320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |