Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq387 93.3 4e-14
>seq387
Length=80018
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || | ||| | || || || ||||| |||||||| ||| | | || ||
Sbjct 1797 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG 1856
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| || || || |||||| |||| | ||||| || || || || | |||||| ||
Sbjct 1857 TCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 1916
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | || | || || | | ||| ||||| || || ||
Sbjct 1917 TCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATG 1976
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| || || ||||| || ||||||||||||
Sbjct 1977 GTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 2012
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || | ||| | || || || |||||||||||||| ||| | | || |
Sbjct 1009 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCA 1068
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| || ||||| |||||| | ||||| || || ||||| || || | |||||| ||
Sbjct 1069 TCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTG 1128
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | | || | || || | | ||| ||||| ||||| ||
Sbjct 1129 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATT 1188
Query 27213 GATTTGCCCGTCAGA 27227
| || ||||| |||
Sbjct 1189 GTCTTACCCGTAAGA 1203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424928180155512
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |