Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq690 170 2e-37 seq387 127 3e-24 >seq690 Length=111065 Score = 170 bits (188), Expect = 2e-37 Identities = 714/1116 (64%), Gaps = 27/1116 (2%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 14041 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 14100 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || |||| || | |||| | |||||| || || ||||| || || || || || Sbjct 14101 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 14160 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 14161 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 14220 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 14221 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCG 14280 Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || ||| ||| ||||| | || | ||| || | | || || || || || Sbjct 14281 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14337 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699 |||||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 14338 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACGAA 14397 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 |||||| || | || || |||||||| |||| ||||| | || ||||| Sbjct 14398 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14457 Query 118760 TATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || ||||| || || | ||| || | | | ||||| || | || |||||| || ||| Sbjct 14458 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 14515 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || | ||| ||||||||||| ||||| || || ||||| ||||| | || | Sbjct 14516 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 14575 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCCT 118935 || || || ||| | | || | ||| | ||| | || || |||| | || | Sbjct 14576 AGGATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-T 14633 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 |||| | || || |||||| |||||||| | || | || || || || Sbjct 14634 CGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 14693 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 | || || | |||| ||| | ||| | || || ||||||||||| || || | Sbjct 14694 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14753 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 ||||||||| || |||| ||||| ||| || | || || | || || || | Sbjct 14754 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14813 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175 || || | ||||| | | ||| |||||||| || || || || | |||| | | Sbjct 14814 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14873 Query 119176 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 | | |||| |||| | || | || || | || ||||||| | | || | Sbjct 14874 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 14930 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 119287 |||| |||||||| || | ||| | ||||| || || || || ||| | || || Sbjct 14931 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 14988 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 | || || ||| ||||| | ||||||||| || || ||| ||||| || || || Sbjct 14989 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 15048 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407 | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||| Sbjct 15049 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 15108 Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 |||||||| || | ||| ||||| |||||||| || Sbjct 15109 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15144 >seq387 Length=80018 Score = 127 bits (140), Expect = 3e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 16193 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 16134 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133 ||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||| Sbjct 16133 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 16075 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 | |||||||| || || |||| ||| ||||| Sbjct 16074 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 16041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425915741560