Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq387 181 3e-40
seq844 111 5e-19
seq408 91.5 4e-13
>seq387
Length=80018
Score = 181 bits (200), Expect = 3e-40
Identities = 181/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || |
Sbjct 1270 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 1329
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||||||||| |||||||| || | ||||||||||
Sbjct 1330 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 1389
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 1390 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 1449
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || || | ||||||||||| | || || ||||| ||||||||
Sbjct 1450 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1504
Score = 152 bits (168), Expect = 2e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| |||
Sbjct 991 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 1050
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 1051 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 1110
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || || || || || | ||| | |
Sbjct 1111 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 1170
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| |||||||| || | |||||| || || ||
Sbjct 1171 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 1202
Score = 147 bits (162), Expect = 7e-30
Identities = 138/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| ||
Sbjct 1608 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1667
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| ||||| | |||||
Sbjct 1668 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1727
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || |||||||||||
Sbjct 1728 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1783
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct 1781 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 1840
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || ||||||||||| ||||| || || || | || ||||| |||||
Sbjct 1841 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 1900
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || || || ||||| || || | ||| | |||
Sbjct 1901 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 1960
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 1961 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 114 bits (126), Expect = 4e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 2133 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 2192
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| ||||| || || || || ||||| || || | || || | || |||||||| ||
Sbjct 2193 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 2252
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 2253 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2290
>seq844
Length=281
Score = 111 bits (122), Expect = 5e-19
Identities = 193/281 (69%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
|| || || ||||| || || || | || ||| || || || || ||||| ||||
Sbjct 1 ACCGTCCCCGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGACGCTGGTGCCATT 60
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | |||| || | || || || || || ||||| || || || || || ||
Sbjct 61 GCCGGTCTCGATGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCTATCGCTTACGGT 120
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | ||| || || || || | || || || | ||||||||||||
Sbjct 121 CTTGACAAGAAGTCTGAGGGTGAGAAGAACGTTTTGATCTTCGACCTTGGTGGTGGTACT 180
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || | || |||| ||||| || || || || || || || ||||||
Sbjct 181 TTCGATGTCTCTCTTTTGACTATTGAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGT 240
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899
|| || || |||||||| || || ||||| || || || ||
Sbjct 241 GACACTCACCTTGGTGGTGAGGACTTTGACAACCGACTTGT 281
>seq408
Length=209791
Score = 91.5 bits (100), Expect = 4e-13
Identities = 184/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 19155 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 19096
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || ||||| |||||||| || ||||| || || |||
Sbjct 19095 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 19036
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || || | || ||| | || || || || || ||||||||||||||
Sbjct 19035 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 18976
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 18975 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 18918
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 18917 ACACTCATCTTGGTGGTGAGGACTTCGACAA 18887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515231083549403
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |