Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq387 132 3e-26
>seq387
Length=80018
Score = 132 bits (146), Expect = 3e-26
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| || | |||||||||| ||||||||| || || ||||| |||
Sbjct 1785 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1844
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||||||||| || ||||| || || || ||||| ||||| || ||
Sbjct 1845 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1904
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657
| |||||||||||| |||| || | || || | || || || ||| | || |
Sbjct 1905 ATACCCTCCTTGTCTTGGATC-TTGGCCTTGACATTGTCGATGGTATCGCTCGAT-TCGA 1962
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| | ||| || ||||| ||||| | ||||| || || || |||||
Sbjct 1963 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 118 bits (130), Expect = 7e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| || | |||||||||| |||||||||||| || ||||| |||
Sbjct 997 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1056
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| | |||||||||||||| ||||| || || | || || || || || ||
Sbjct 1057 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1116
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 1117 ATACCCTCCTTGTCTTGGATCTT 1139
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|||||||| ||||| || || ||||| || || | || |||||||||||||| |||||
Sbjct 1314 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1373
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| || || || || || || || | || |||||||| ||| || | |||||| |
Sbjct 1374 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGTT 1432
Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
|| ||||| ||| ||||| | || || || || ||||| || || || ||
Sbjct 1433 GTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 1492
Query 34695 AAAAATCTGCAT 34706
||| ||||||||
Sbjct 1493 AAAGATCTGCAT 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314724993243833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |