Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq387 131 1e-25
>seq387
Length=80018
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| || |||||||| | ||||| |||||||| ||| || |
Sbjct 2011 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1952
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| || || |||||||| || || || || || || ||
Sbjct 1951 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1892
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | |||||| || ||| | |||||| | || |||||||||||||
Sbjct 1891 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1832
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | ||| | || |||||| | || ||||| ||
Sbjct 1831 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGAGGTGGTAT 1782
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067
||| || || ||| | || ||||||||||| ||| || ||| | || || | |||||
Sbjct 1203 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAA 1144
Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127
|| || |||||||| || || || || || ||||| || || | || | ||||||
Sbjct 1143 GGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGG 1084
Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187
|||||| | ||||| | || ||||||||||||| |||||||||||||| || |
Sbjct 1083 AAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCT 1024
Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | || |||||| | || ||||| ||
Sbjct 1023 CCATCTCGTCTTGCGTCTCCGAGGTGGTAT 994
Score = 82.4 bits (90), Expect = 7e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042
|| ||||||| || || || || ||||| ||||| ||| |||| ||||||||||||||
Sbjct 2295 ACACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGT 2236
Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102
| |||||| | || || | ||||| || || || ||||| || || || || || |
Sbjct 2235 CTTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 2176
Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162
| || || || || || | || || || || | ||||| | ||| | ||||| |
Sbjct 2175 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACT 2116
Query 27163 ACA 27165
|||
Sbjct 2115 ACA 2113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434911870787520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |