Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq387 100 2e-16
>seq387
Length=80018
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| ||
Sbjct 1797 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG 1856
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| || || || || || || | ||||||||||| | || | | ||| |||
Sbjct 1857 TCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 1916
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||| || |||| | | | ||||||||||| || || || | || ||
Sbjct 1917 TCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATG 1976
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || || || ||||| || |||||||||||
Sbjct 1977 GTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| |
Sbjct 1009 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCA 1068
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| ||||| || || || || || || ||||| || | ||| | | ||| |||
Sbjct 1069 TCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTG 1128
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|| ||| || |||| ||| | | | ||||||||||| || || || | |||||
Sbjct 1129 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGAT 1187
Query 39249 ACTTTTTCCCGTCAG 39263
| || ||||| ||
Sbjct 1188 TGTCTTACCCGTAAG 1202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429539312660513
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |