Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq387 141 2e-28
seq744 104 6e-17
>seq387
Length=80018
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||||||||| || ||||||| ||||||||||| | ||||
Sbjct 1791 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 1850
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || ||||| || ||||| || | ||| || ||||| || || |||||
Sbjct 1851 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 1910
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||||| || | ||| || || |
Sbjct 1911 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGG 1970
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || ||||| || | ||||| | ||| | ||||||
Sbjct 1971 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2011
Score = 140 bits (154), Expect = 8e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||||||||| || ||||| | ||||||||||| | ||||
Sbjct 1003 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTT 1062
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 1063 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 1122
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| || |||||||| || | ||| || || |
Sbjct 1123 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 1182
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| ||||| |||||
Sbjct 1183 GTGATTGTCTTACCCGT 1199
Score = 132 bits (146), Expect = 1e-25
Identities = 136/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595
|||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| |
Sbjct 2113 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 2172
Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655
|||| || || ||||| |||||||| |||||||| ||| ||| ||||||||||| |
Sbjct 2173 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 2232
Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | ||||| || | ||||| ||||| || || | ||| || | ||| | ||||||
Sbjct 2233 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2290
Score = 129 bits (142), Expect = 1e-24
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592
|| ||||||| | |||||||| ||||| || || ||||| || |||||||| | |||||
Sbjct 1603 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 1662
Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652
||||||| || || ||||| |||||||| || ||||| ||| ||| || |||||||
Sbjct 1663 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 1722
Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
| |||| ||| || || | ||||| ||||| || || | ||| || | ||| | ||||
Sbjct 1723 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 1782
Query 225713 T 225713
|
Sbjct 1783 T 1783
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||| || || ||||| ||||||| ||||| |||| | ||| | |||||
Sbjct 1293 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 1352
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| || || | |||||| || || || |||||||||||||||||
Sbjct 1353 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1412
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||| ||||| || | || || || | ||||| |||
Sbjct 1413 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 1472
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 1473 TTTCCGGTCAAAGTCTT 1489
>seq744
Length=81122
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609
|| || || || || |||||||| || |||||||| | ||| |||||||| || || |||
Sbjct 15084 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGGATA 15025
Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
|| |||||||| |||||||| ||| ||| ||||||||||| |||| || || ||
Sbjct 15024 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCG 14965
Query 225670 AACGTGATCGTCTTGCCCGT 225689
| ||||| ||||| || ||
Sbjct 14964 AGGGTGATGGTCTTTCCGGT 14945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192512849553494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |