Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1012 120 2e-22 >seq1012 Length=44893 Score = 120 bits (132), Expect = 2e-22 Identities = 237/346 (68%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 37088 TTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 37029 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG-TCCGTGTA 27500 | | ||||||| || || || || | || ||||| || || || ||||| Sbjct 37028 ATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCG-CCGTCGGCATCAGTGTA 36970 Query 27501 CTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 27560 ||| || || ||||| ||||| |||||||||||||| |||||||| || || || || Sbjct 36969 CTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 36910 Query 27561 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 ||| ||| || ||| |||| || ||| || ||||| | ||||||||| ||| Sbjct 36909 GTGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGATCCCTAC 36850 Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 36849 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAAGCTCGGC 36790 Query 27681 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 36789 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 36746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369501791453831