Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
75.1_202017-04-19] 1,201 sequences; 18,463,082 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq690 100 4e-16
seq839 89.7 7e-13
>seq690
Length=111065
Score = 100 bits (110), Expect = 4e-16
Identities = 293/449 (65%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||| ||| ||||||||| || || |||| || | | ||||||||| || || ||
Sbjct 14644 ATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 14703
Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034
||| | | ||| || ||||| | || || ||||| || ||||| | ||||| ||
Sbjct 14704 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 14763
Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093
|| || ||||| || | || || || || || ||||| ||||| || |
Sbjct 14764 GGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 14822
Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153
|| || | | ||||| ||||| || || ||||| || || | | ||||| || |
Sbjct 14823 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 14882
Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213
| ||||| || ||||| | |||| || ||| | ||| ||| | ||| ||||| |
Sbjct 14883 TGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 14942
Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273
| ||||| || ||||| || || | ||| || || | || || ||||| ||
Sbjct 14943 TGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 15002
Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333
|| | || || || || || |||| || || |||| || || | |||||||
Sbjct 15003 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 15062
Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362
||||||| || || ||||||| |||||
Sbjct 15063 AGATACCATCAATGGAGTCATCCTTCATG 15091
>seq839
Length=49941
Score = 89.7 bits (98), Expect = 7e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221
|| ||||| ||||| || || ||||| |||||||| || || ||||| | || | ||
Sbjct 37004 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 37063
Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281
|| | ||| || ||||| || ||||| ||||||||||| |||||||| ||| |||||
Sbjct 37064 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 37123
Query 48282 GC 48283
||
Sbjct 37124 GC 37125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694658371284640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |