Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq620 147 2e-30 >seq620 Length=90608 Score = 147 bits (162), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| || || || || || || || | |||||||||| ||||| || || |||||| Sbjct 64012 ACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 63953 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | | | | ||||||||||| || | || || || ||||| ||||| ||| Sbjct 63952 CTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCT 63893 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| || || |||||| |||| || ||||| ||||| || || |||||||| || | Sbjct 63892 TCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTC 63833 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| |||||||||||||| | ||||||||||| || ||||||||||||| Sbjct 63832 TTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTC 63773 Query 117192 TGCTGTTCA 117200 | || |||| Sbjct 63772 TCCTCTTCA 63764 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||||||||| ||| | || |||||| | | | Sbjct 77959 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 78018 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 78019 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 78078 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || || || || |||| || || || ||| ||||| Sbjct 78079 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 78138 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || ||||| || ||||| Sbjct 78139 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCG 78173 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || || ||||| | || |||||| | | ||| | | | | |||| |||| Sbjct 78768 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACG-TCAA 78826 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||| |||||| | || |||||||||||||||| ||| || Sbjct 78827 GGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGG 78886 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || || | || || || ||| ||||| || || |||||| |||| || Sbjct 78887 AAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCT 78946 Query 40890 GCATCTAGTGTTGCG 40904 ||||| || ||||| Sbjct 78947 CCATCTCGTCTTGCG 78961 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || || || | || Sbjct 77680 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77739 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 77740 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 77799 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||| | |||| || || || ||||| || || | | || ||| |||||||| Sbjct 77800 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 77857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211922528800