Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq620 89.7 5e-13 >seq620 Length=90608 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| |||| | || || || || || ||||| || ||||| ||||| || || || Sbjct 63935 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63876 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||| | || || ||| | ||||| || || || ||||| || || || || |||||| Sbjct 63875 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAG 63816 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | || || || |||||||||||||| || || ||||| || || Sbjct 63815 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCT 63772 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| || || || ||||| |||| || || |||| Sbjct 78466 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 78525 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || || |||||||||||| | || || || ||| Sbjct 78526 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78585 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||| ||||| | || || | ||| | ||| || ||| Sbjct 78586 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 78645 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| || ||||| || || || | ||| | || |||| Sbjct 78646 ATCCAAAAGGAATCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGTA 78694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760103549600