Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq620 158 2e-33
seq613 93.3 6e-14
seq523 84.2 3e-11
>seq620
Length=90608
Score = 158 bits (174), Expect = 2e-33
Identities = 233/329 (71%), Gaps = 6/329 (2%)
Strand=Plus/Minus
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315
|||||| | ||| | || | |||||| || || |||| |||||| || | |
Sbjct 64091 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 64032
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| ||| || | | |||||| |||| || ||||| | || | ||| || || |||||
Sbjct 64031 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 63975
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| |||| |||||| |||| | || |||| | || ||| |||| | ||
Sbjct 63974 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 63915
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
|| || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| |||
Sbjct 63914 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 63855
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || |||||||| || || || | ||||||| | || ||||||||||||||
Sbjct 63854 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 63795
Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584
|| ||| ||||||||| ||| || ||
Sbjct 63794 CTCCACACCGACTTTGCCTGTCTCCTCTT 63766
>seq613
Length=256775
Score = 93.3 bits (102), Expect = 6e-14
Identities = 220/330 (67%), Gaps = 2/330 (1%)
Strand=Plus/Minus
Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943
||||||| ||| ||||| |||||||||| ||||| | |||||||| | |||
Sbjct 8158 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 8099
Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003
|| |||||| | |||| || | ||| | ||||| | ||| | |||| |||
Sbjct 8098 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 8039
Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062
|| ||| || ||| | || | ||| || |||| | |||| || | |||||
Sbjct 8038 ATCTGGGATGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGAAG 7980
Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122
|| || |||||||| || |||||||| ||||||||||| || | || || ||||
Sbjct 7979 GGAAGGTGATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 7920
Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182
|| ||| |||||| || | || || || ||| |||| | | || |||||
Sbjct 7919 TGATGCCGACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 7860
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212
|||||| ||||||||| || ||| ||||
Sbjct 7859 CATCAAGAACAATCCAACTGACAGGCGGAT 7830
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360
||| | || ||| | ||||||||||| | ||| | ||||||||||| || || |||
Sbjct 7664 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 7605
Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419
||||| || | |||| || || |||||||| | |||||||| | ||| || | ||
Sbjct 7604 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 7546
Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||||| | | ||| || || || || || ||||| | |||| | || ||||| |
Sbjct 7545 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 7487
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519
|| |||| | ||| ||||||| ||| ||| |||||| ||
Sbjct 7486 AGACGCAATTGGAAAGGGAGCCTAGAGATTTCCCCAAGTTG 7446
>seq523
Length=111003
Score = 84.2 bits (92), Expect = 3e-11
Identities = 171/254 (67%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
||||||||| || || || || || || || || || | ||| |||| | || |||
Sbjct 14845 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14786
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || |||||||| || || | | || ||| ||| || |||| |
Sbjct 14785 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14726
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
||||| | || | || || || |||||| | | ||| | ||||||||||| ||| |
Sbjct 14725 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14666
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| | |||| || ||||| |||| | || || || || |||| |
Sbjct 14665 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14606
Query 97104 GGCGAAGAGTTTGA 97117
|| ||||| |||||
Sbjct 14605 GGTGAAGAATTTGA 14592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741048732538800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |