Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq452 138 2e-27
seq300 111 3e-19
seq1017 98.7 2e-15
>seq452
Length=12024
Score = 138 bits (152), Expect = 2e-27
Identities = 240/349 (69%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566
||||| || | || || || |||||||||| ||||| ||||| | |||| |
Sbjct 3980 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 3921
Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626
| || ||||| |||| || || ||||| || ||||| ||| | |||||||
Sbjct 3920 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 3861
Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686
|||||||| ||||| ||||||| |||||||||||| || | || || || || |
Sbjct 3860 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 3801
Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746
| | | | || || || ||||| ||| || ||||||| ||| | ||||
Sbjct 3800 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 3741
Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806
| ||| || |||||||||||||| || ||||| |||||||| || |||||| |||
Sbjct 3740 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 3681
Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855
|||| ||||| || || ||||||||| | |||||||| |||||
Sbjct 3680 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCCCGTTATATCTTCACAAA 3632
>seq300
Length=185577
Score = 111 bits (122), Expect = 3e-19
Identities = 122/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| ||
Sbjct 131918 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 131977
Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293
||| ||| | |||| | | |||||||| || ||| || || | ||||||||| || |
Sbjct 131978 CCAACCTGGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 132037
Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333
|||||||||||||||| || |||||||| ||| |||||
Sbjct 132038 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 132077
Score = 100 bits (110), Expect = 6e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|||||||| || || ||||||||||||||||| || || | || || ||||| |
Sbjct 131437 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 131496
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| ||||||||| |||| ||||| | ||||
Sbjct 131497 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 131556
Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
|| | ||| || ||| || | ||| | | ||| |||||||||||||||||||
Sbjct 131557 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 131615
Query 279878 TGGCTTCCT 279886
|| ||||||
Sbjct 131616 TGACTTCCT 131624
Score = 86.0 bits (94), Expect = 1e-11
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777
|||||||| || || |||||||| || | ||| |||| || ||| |||| || ||||
Sbjct 132531 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 132590
Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823
||| | ||| |||||||||||||||||||||||| ||||| |||
Sbjct 132591 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 132635
>seq1017
Length=185912
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || |||
Sbjct 20999 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 20940
Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|| | | || || || || || ||||| ||| | || | | ||| |||
Sbjct 20939 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTAGGTTATGTC 20883
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
|||||||| || |||||||| ||| | | ||| |||||| |||| || || ||||||
Sbjct 20882 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 20823
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 20822 CAGTGGCGATA 20812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027821918850330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |