Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq620 170 4e-37
seq667 104 4e-17
seq452 102 2e-16
seq300 100 5e-16
>seq620
Length=90608
Score = 170 bits (188), Expect = 4e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| |||||||| || ||||||||
Sbjct 78185 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 78126
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | || || ||||| || ||
Sbjct 78125 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 78066
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| ||
Sbjct 78065 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 78007
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | ||| |||||||| || |||||||| |||||||| || |||||
Sbjct 78006 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77959
Score = 145 bits (160), Expect = 1e-29
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 78973 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 78914
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | || || |||||||| ||||||| ||| || || || ||
Sbjct 78913 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78854
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| ||
Sbjct 78853 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 78795
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440
||| | ||||| || || ||||| ||
Sbjct 78794 TTCAAGAGTGATTGTCTTACCCGTAAG 78768
Score = 138 bits (152), Expect = 2e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| ||||| |||||||| | |||||| || || || || | || ||| |||
Sbjct 77855 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77796
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 77795 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77736
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 77735 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77680
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || || || ||||||||||| || |||||
Sbjct 78692 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 78633
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || || || || || | || ||| || || || |||
Sbjct 78632 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 78573
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || |||
Sbjct 78572 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 78513
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | |||||||| || ||||||||
Sbjct 78512 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78466
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
||||| || | || | ||||| || | ||||| |||||||| || | || |||||||
Sbjct 78362 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78303
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| |||||||| |||||||| || |||||||| |
Sbjct 78302 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78243
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 78242 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78187
>seq667
Length=80727
Score = 104 bits (114), Expect = 4e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || ||||| || || || | |||||| |||||||| || | || ||||||
Sbjct 15179 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 15120
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| | |||||| ||||||||||| |
Sbjct 15119 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 15060
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || | ||||||||| ||||| || ||
Sbjct 15059 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 15025
>seq452
Length=12024
Score = 102 bits (112), Expect = 2e-16
Identities = 266/401 (66%), Gaps = 10/401 (2%)
Strand=Plus/Plus
Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191
|||||| | | || || |||||||| || || || || | | |||||| ||||
Sbjct 3526 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 3585
Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251
| || || || |||||| || | || || | | | || | ||||||||||||
Sbjct 3586 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 3645
Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311
| ||||| || ||| || || || ||| || | ||| ||||| ||| |||
Sbjct 3646 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 3705
Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371
|||| ||||||||| || || ||| ||| ||| || | ||||| |||| | |
Sbjct 3706 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 3761
Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427
|| | || || || || |||||||| ||| ||||| ||| ||||||| ||
Sbjct 3762 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 3821
Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486
| ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| |||
Sbjct 3822 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 3880
Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|| || || ||||| ||| | || || ||||| || ||
Sbjct 3881 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 3921
>seq300
Length=185577
Score = 100 bits (110), Expect = 5e-16
Identities = 441/683 (65%), Gaps = 30/683 (4%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| | ||||||| ||| || ||| |||||||| ||||| |||||||||
Sbjct 132101 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 132042
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACA-GAGCCCCGAG- 225095
|| || ||||| ||||| | ||| || ||| || |||||||| || || | || ||
Sbjct 132041 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 131982
Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154
| || | | ||| || ||||||| ||| | || |||| || || | ||| |||||
Sbjct 131981 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 131922
Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGT-----TGCTGA 225206
|||| | | ||| || ||||| | | ||||| ||| | ||| |||||
Sbjct 131921 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 131863
Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266
||| || |||| |||| || | ||| |||| ||| | | | |
Sbjct 131862 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 131807
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACC-G 225323
|||||| | | ||| || |||| || | || | || ||| | ||| | |
Sbjct 131806 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 131747
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | | || | |||||| || |||||| ||| | || |||||| | |||
Sbjct 131746 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTGG-ACGAAATCCTCAAGG 131688
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || ||| | || | | ||||| ||| || | | |||| | || ||| |
Sbjct 131687 TTACCAGGGTACCTCTTCAACTTGAAGTTGTTAAGATGAAGAAC----GTCGGTAACAGT 131632
Query 225443 GCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499
|| | ||||||| |||||||||| || ||||||||||| | ||| || || |||
Sbjct 131631 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 131574
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| | |||| ||||| | ||||| || |||| |||||| ||||| |||||
Sbjct 131573 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 131514
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| | ||||| || || | | ||| || || || | |||| |||||||| |||||
Sbjct 131513 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 131454
Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642
|| || || || || || || ||
Sbjct 131453 CCGCCAGAAAGAGAACCAATGGA 131431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921609382083600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |