Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq620 170 4e-37 seq667 104 4e-17 seq452 102 2e-16 seq300 100 5e-16 >seq620 Length=90608 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| |||||||| || |||||||| Sbjct 78185 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 78126 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | || || ||||| || || Sbjct 78125 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 78066 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| || Sbjct 78065 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 78007 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||| |||||||| || |||||||| |||||||| || ||||| Sbjct 78006 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77959 Score = 145 bits (160), Expect = 1e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| ||||| || || |||||||| Sbjct 78973 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 78914 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || |||||||| ||||||| ||| || || || || Sbjct 78913 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78854 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| || Sbjct 78853 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 78795 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | ||||| || || ||||| || Sbjct 78794 TTCAAGAGTGATTGTCTTACCCGTAAG 78768 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| ||||| |||||||| | |||||| || || || || | || ||| ||| Sbjct 77855 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77796 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| |||||||| ||||||||||| | Sbjct 77795 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77736 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 77735 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77680 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || ||||||||||| || ||||| Sbjct 78692 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 78633 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || | || ||| || || || ||| Sbjct 78632 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 78573 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || ||| Sbjct 78572 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 78513 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | |||||||| || |||||||| Sbjct 78512 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78466 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | || | ||||| || | ||||| |||||||| || | || ||||||| Sbjct 78362 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78303 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| |||||||| |||||||| || |||||||| | Sbjct 78302 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78243 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||| || ||||| || || ||||||||||| |||||||| Sbjct 78242 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78187 >seq667 Length=80727 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || ||||| || || || | |||||| |||||||| || | || |||||| Sbjct 15179 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 15120 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 15119 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 15060 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || | ||||||||| ||||| || || Sbjct 15059 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 15025 >seq452 Length=12024 Score = 102 bits (112), Expect = 2e-16 Identities = 266/401 (66%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191 |||||| | | || || |||||||| || || || || | | |||||| |||| Sbjct 3526 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 3585 Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251 | || || || |||||| || | || || | | | || | |||||||||||| Sbjct 3586 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 3645 Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311 | ||||| || ||| || || || ||| || | ||| ||||| ||| ||| Sbjct 3646 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 3705 Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371 |||| ||||||||| || || ||| ||| ||| || | ||||| |||| | | Sbjct 3706 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 3761 Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427 || | || || || || |||||||| ||| ||||| ||| ||||||| || Sbjct 3762 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 3821 Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486 | ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| ||| Sbjct 3822 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 3880 Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 || || || ||||| ||| | || || ||||| || || Sbjct 3881 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 3921 >seq300 Length=185577 Score = 100 bits (110), Expect = 5e-16 Identities = 441/683 (65%), Gaps = 30/683 (4%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| ||| || ||| |||||||| ||||| ||||||||| Sbjct 132101 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 132042 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACA-GAGCCCCGAG- 225095 || || ||||| ||||| | ||| || ||| || |||||||| || || | || || Sbjct 132041 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 131982 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||| | || |||| || || | ||| ||||| Sbjct 131981 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 131922 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGT-----TGCTGA 225206 |||| | | ||| || ||||| | | ||||| ||| | ||| ||||| Sbjct 131921 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 131863 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 ||| || |||| |||| || | ||| |||| ||| | | | | Sbjct 131862 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 131807 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACC-G 225323 |||||| | | ||| || |||| || | || | || ||| | ||| | | Sbjct 131806 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 131747 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || | | || | |||||| || |||||| ||| | || |||||| | ||| Sbjct 131746 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTGG-ACGAAATCCTCAAGG 131688 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || ||| | || | | ||||| ||| || | | |||| | || ||| | Sbjct 131687 TTACCAGGGTACCTCTTCAACTTGAAGTTGTTAAGATGAAGAAC----GTCGGTAACAGT 131632 Query 225443 GCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499 || | ||||||| |||||||||| || ||||||||||| | ||| || || ||| Sbjct 131631 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 131574 Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| | |||| ||||| | ||||| || |||| |||||| ||||| ||||| Sbjct 131573 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 131514 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 || | ||||| || || | | ||| || || || | |||| |||||||| ||||| Sbjct 131513 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 131454 Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642 || || || || || || || || Sbjct 131453 CCGCCAGAAAGAGAACCAATGGA 131431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921609382083600