Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq523 179 7e-40 seq620 132 9e-26 >seq523 Length=111003 Score = 179 bits (198), Expect = 7e-40 Identities = 440/664 (66%), Gaps = 10/664 (2%) Strand=Plus/Plus Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792 || || || |||||||||||| | |||||||| || ||||||| || |||||||||| | Sbjct 14400 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14459 Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852 ||| || ||||||||| ||| | || | || |||||| || || |||||| | Sbjct 14460 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14519 Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912 | ||| || | | || |||| || | | ||||||||| |||||||| Sbjct 14520 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 14579 Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 || || || || || || | || ||| | || || |||||| || || Sbjct 14580 TCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGA 14639 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| ||| |||| || || || | ||| | || |||||| || |||| ||||||| Sbjct 14640 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 14699 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 ||||| | ||| || || | | | ||| ||| ||| ||||||||| | || Sbjct 14700 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 14759 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||| || || ||||||| ||||| | |||| |||| ||| || || ||| Sbjct 14760 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 14819 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207 ||||| || || || | || | | |||||| |||| | ||| | || || ||| Sbjct 14820 TTGTTACCACCTTG----ATCAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 14874 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | |||||||| |||| || ||||| || ||||||| |||||| | | || | Sbjct 14875 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14934 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || ||| | || | || ||||| ||||||||| | || ||| |||||| | Sbjct 14935 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14994 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 | || || || || ||| ||| ||||||| | || ||||| || |||| | Sbjct 14995 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 15054 Query 245388 GGGG 245391 |||| Sbjct 15055 GGGG 15058 >seq620 Length=90608 Score = 132 bits (146), Expect = 9e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | ||| Sbjct 63935 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 63876 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||| ||| || |||| || ||||| || || |||||||| ||||| Sbjct 63875 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTTACCTTCTCTAACGA 63817 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||| | |||||||| || || | ||||||||||| ||||| ||| Sbjct 63816 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 63765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325861208800