Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq523 174 2e-38
seq620 122 1e-22
seq452 114 2e-20
>seq523
Length=111003
Score = 174 bits (192), Expect = 2e-38
Identities = 719/1120 (64%), Gaps = 33/1120 (3%)
Strand=Plus/Plus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 13978 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14037
Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182
|| |||| || | |||| | |||||| || || ||||| || || ||||| |
Sbjct 14038 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14097
Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239
| || | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 14098 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 14154
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
| || | || || ||||| |||||||| || |||| || ||||| | ||| || || |
Sbjct 14155 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGT 14214
Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356
| || || ||| ||| ||||| | || | ||| || | | || || || |
Sbjct 14215 TGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTG 14271
Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416
| |||||||| || || || || ||||||| | | ||| | |||| || | |
Sbjct 14272 TAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTA 14331
Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476
| | |||||| || | || || |||||||| |||| ||||| | || |
Sbjct 14332 CGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAAT 14391
Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||| || ||||| ||||| | || || | | | ||||| || | || |||||| ||
Sbjct 14392 ACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTT 14449
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||||| | ||| |||||||||||| || || || || ||||| ||||| |
Sbjct 14450 GGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGC 14509
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCC 116652
|| ||| || || ||| | | || | |||| | || | | || || |||| ||
Sbjct 14510 CTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCC 14568
Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712
| |||||| | || || ||||| |||||||| | | || | || || ||
Sbjct 14569 T-CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 14627
Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772
|| | ||||| | |||| ||| | ||| | || || ||||||||||| ||
Sbjct 14628 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 14687
Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832
|| | ||||||||| || |||| ||||| ||| || | || || | || || ||
Sbjct 14688 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTC 14747
Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892
| || || | ||||| | | ||| |||||||| || || || || | ||||
Sbjct 14748 TTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAG 14807
Query 116893 G-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946
| || | |||| |||| | || | || || | || || |||| | |
Sbjct 14808 GCACCAGGACGCTTG---TTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCT 14864
Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGT 117004
|| ||||| |||||||| || | || | ||||| || || || || ||| | |
Sbjct 14865 CGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CT 14922
Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064
| || | || || ||| ||||| | ||||||||| || || ||| ||||| || || |
Sbjct 14923 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 14982
Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124
| | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||
Sbjct 14983 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 15042
Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164
| |||||||| || | || ||||| |||||||| ||
Sbjct 15043 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15082
>seq620
Length=90608
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 63778 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACCA 63837
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||||
Sbjct 63838 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63896
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672
|||||||| || || |||| || ||||||
Sbjct 63897 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63930
>seq452
Length=12024
Score = 114 bits (126), Expect = 2e-20
Identities = 287/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 3481 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3540
Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
||||||||||| |||| ||||| ||| |||| |||||||||| |||||| |
Sbjct 3541 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3599
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 3600 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 3658
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 3659 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3718
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | ||| | || || |||||| || | | | |||||
Sbjct 3719 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 3778
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103
|| || || || || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 3779 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 3837
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 3838 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 3897
Query 176164 GTCGGCCA 176171
||||||||
Sbjct 3898 GTCGGCCA 3905
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856
||| ||||| ||||| | || || | ||||||||| || || || | |||||| ||
Sbjct 4631 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4690
Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916
|| || | ||||||| ||| ||||| | || || ||||| || ||||||| ||||||
Sbjct 4691 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 4750
Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974
|| || || | || || |||| || || ||||||||||| || | ||| ||||
Sbjct 4751 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 4808
Query 176975 CCAGTAATTTTG 176986
|||| |||| ||
Sbjct 4809 CCAGAAATTCTG 4820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613498534210800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |