Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq910 87.8 1e-11 seq472 86.0 5e-11 >seq910 Length=10866 Score = 87.8 bits (96), Expect = 1e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 518501 || || || || ||||| | ||||| || | ||||| || || || ||||| | | Sbjct 10620 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAATTTAC 10563 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 || || || || || ||||| |||| ||| ||| ||||| |||||| |||| | | Sbjct 10562 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCT 10503 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 | || ||||| || || || |||| | || | || | |||||||||||| ||||| | Sbjct 10502 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 10443 Query 518622 GATTACCTTGATCATTCGC 518640 |||| || ||||| || || Sbjct 10442 GATTGCCCTGATCGTTGGC 10424 >seq472 Length=360579 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905 || |||| ||| |||||||||||||| ||||| ||| |||||||||| |||||||| | Sbjct 33815 AGGTTAAAAGGAAAAGAAGGTCGTATGAGAGGTAATCTGATGGGAAAGCGTGTCGACTTT 33874 Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAA 668937 || || || || |||||||| ||| ||||| Sbjct 33875 TCAGCGCGAACGGTTATTACCGGTGACCCCAA 33906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780766325677780