Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq636 120 3e-22 seq523 84.2 2e-11 >seq636 Length=267295 Score = 120 bits (132), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 ||||| || ||||| ||||| || || |||||||| | |||||||||| ||||| || Sbjct 36811 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 36870 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 ||||||||||| || | |||||| || ||||||||||| || ||||| || ||||||| Sbjct 36871 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 36930 Query 19102 GCAACTAGTCT 19112 || || ||||| Sbjct 36931 GCCACCAGTCT 36941 >seq523 Length=111003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 ||||| | ||||| ||||||||| | |||| ||||||||||||| |||||| | Sbjct 13419 GTTCGAAGGTAATAGCAACCAGTCTTGAGACCTCGCTTCCATCCATAGAAGTGCATAGAA 13478 Query 47073 GTTAATTTAGAATAACTA-GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | | || ||| | || | || | ||| || ||||| || || ||||||||| Sbjct 13479 GTGAGCTGAG-GGAACGAGGGGTTGGAGAGATGGATGTTAAGGGACTGGGACTGATCAAT 13537 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 || || || | |||||||| | || | | | || | || | |||||||| ||||| Sbjct 13538 GAAAGCTCCACGGTCAGCTGCAAGGTCGATGACAGCCTTCTGCGAGATCTCCCAGACTGT 13597 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGATT 47224 | |||||||| ||| | || || |||| ||| Sbjct 13598 TCGATAAATTTTTTTGAGATCATCGGGGATATT 13630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100860213200