Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq452 122 3e-22 seq523 107 6e-18 seq620 102 2e-16 seq472 93.3 1e-13 >seq452 Length=12024 Score = 122 bits (134), Expect = 3e-22 Identities = 261/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048 ||||||||| ||||| | || |||||||| | | ||| || | | || || |||| Sbjct 3481 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3540 Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106 | |||| |||| | |||||| || ||||| ||| | |||| ||||| | Sbjct 3541 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 3595 Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162 | || || || || ||||| ||| |||| || |||||| ||||| | | || Sbjct 3596 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGGGCAGA 3654 Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 |||||||| || ||||| |||||| || |||||||| ||||| || | | ||||| Sbjct 3655 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 3714 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||||||||| ||| ||||| ||||| || | || ||||| | | | |||||||| Sbjct 3715 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 3774 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||| || |||||| | | | || ||||| || || | || ||||| || || Sbjct 3775 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 3834 Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366 ||| | ||| ||| |||||| Sbjct 3835 TTCTTTGGTGAGGTTTCGCTTGAA 3858 >seq523 Length=111003 Score = 107 bits (118), Expect = 6e-18 Identities = 422/661 (64%), Gaps = 7/661 (1%) Strand=Plus/Plus Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723 |||||||| || | | ||| ||||| || || ||| |||||||||||| ||| Sbjct 14424 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 14483 Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783 || ||| || ||||| | || || || || || | ||| || | |||| || Sbjct 14484 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 14543 Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843 || || | |||| | | ||| || || ||| ||| || | || ||| Sbjct 14544 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 14603 Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903 |||||| || ||||||||||||| |||| || | || | |||| || Sbjct 14604 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 14661 Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961 | |||| ||||||| ||| || | ||| ||| | || |||||||| || | | Sbjct 14662 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 14721 Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021 | | |||||| | || || ||||||| || || | ||| || | ||||| | Sbjct 14722 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 14781 Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078 | ||||| ||||| || || || |||| | |||| ||||| ||||| || | Sbjct 14782 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 14841 Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138 | ||||| || | | | | | ||||||||||| || || ||||| ||||||| Sbjct 14842 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 14901 Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 | ||| ||| | || || | || | ||| ||||| || || ||||||||||| | Sbjct 14902 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 14961 Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258 || || || ||||| || ||| | ||||| | | ||||| ||||| || |||| Sbjct 14962 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 15021 Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | | ||| | | || |||| || | ||| ||||| || || || |||||||| | Sbjct 15022 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 15081 Query 156319 G 156319 | Sbjct 15082 G 15082 >seq620 Length=90608 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||| || ||||||| ||| | | Sbjct 63997 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 63938 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||| | || ||| |||||||||||| || ||||| || || ||| |||| | | Sbjct 63937 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 63878 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || |||||||| ||||| ||| | | ||||| || || ||||||| Sbjct 63877 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 63818 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | ||||||| || |||||||| |||||| Sbjct 63817 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 63777 >seq472 Length=360579 Score = 93.3 bits (102), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| || || ||||||| ||| | | | ||| ||||| |||| || | | Sbjct 35718 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 35659 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 || ||||||||||| || || || ||||| |||||||| | ||| | ||||||| Sbjct 35658 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 35599 Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||||| ||||| | | |||| | ||| | || | ||| | | ||| | ||||| Sbjct 35598 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 35541 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770 |||||| || | |||||| || | ||||| ||| | |||||||| | | || || Sbjct 35540 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 35484 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | | ||| | | |||||| ||||| |||||| ||| || |||| Sbjct 35483 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 35437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471796290840810