Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq620 132 9e-26
>seq620
Length=90608
Score = 132 bits (146), Expect = 9e-26
Identities = 154/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638
|| |||| |||| | ||||| || | || ||||| || || || || ||||| ||||
Sbjct 78978 ACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAAT 78919
Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698
| || ||| ||| || ||||| ||||||||||| || ||||| |||| ||| ||||| |
Sbjct 78918 CGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAG 78859
Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758
| || || || ||||| ||||| ||||| || || || || || || ||||| | | ||
Sbjct 78858 GGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATT 78799
Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGT 82786
| ||||| | ||| || ||||| || ||
Sbjct 78798 CGACTTCAAGAGTGATTGTCTTACCCGT 78771
Score = 96.9 bits (106), Expect = 7e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|| || || ||| | || || ||||| || || || ||||||||||| | || ||| ||
Sbjct 77855 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 77796
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| ||||| || || ||||| || || ||||| || || ||||| || || || || |
Sbjct 77795 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 77736
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || ||||| | ||| || ||||| || || | ||||| || || || |||||
Sbjct 77735 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981812984983070
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |