Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq620 134 1e-26 >seq620 Length=90608 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| ||||| || || ||||| |||||||| || ||||| ||| | Sbjct 78185 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 78126 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || || || || || |||||||| |||||||| || || || Sbjct 78125 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 78066 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| ||| | || ||| |||||| || Sbjct 78065 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 78006 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 78005 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77959 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||||||||| |||||||||||| || || || || || Sbjct 78674 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 78615 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || ||||||||||| || |||||||| || || || ||||| || || ||| Sbjct 78614 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 78555 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| ||||| || || |||||||| || || || Sbjct 78554 ATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTT 78495 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || || || ||||| Sbjct 78494 CCGGTCAAAGTCTTGACAAAGATCTGCAT 78466 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| || || ||||| ||||| || ||||| || || || || || || || Sbjct 77834 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 77775 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||||| ||| | |||||||| || ||||| || ||||| || Sbjct 77774 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATA 77715 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || |||||||| | ||| || |||||||||||||| ||||| Sbjct 77714 GTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGTTT 77673 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| ||||| || || ||||| ||||||||||| ||||| ||| | Sbjct 78973 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 78914 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || ||||| || || || || | || |||||||| || || Sbjct 78913 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 78854 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| ||| | || ||| |||||| || Sbjct 78853 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACT 78794 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| || || ||||| || Sbjct 78793 TCAAGAGTGATTGTCTTACCCGT 78771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505391261247600