Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq523 168 8e-37
seq452 143 3e-29
seq620 114 2e-20
>seq523
Length=111003
Score = 168 bits (186), Expect = 8e-37
Identities = 716/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Plus
Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927
|||||||||| ||||||| | || | || ||||||||| || | | ||||||||
Sbjct 13978 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14037
Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987
||| | || || | ||| || |||||| || | ||||| || || || || |
Sbjct 14038 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14097
Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 14098 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14157
Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102
|| | || || ||||| || ||||| | ||||| ||| | || ||||| || ||
Sbjct 14158 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 14212
Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 14213 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14269
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 14270 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 14329
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 14330 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14389
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 14390 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14446
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| ||| |||| |||||||||||| ||||| || || ||||| || ||
Sbjct 14447 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14506
Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453
| | ||| || || ||||| | || | |||| | | | | || ||| | ||
Sbjct 14507 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 14563
Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513
|| | |||||| | || || |||||| || ||||| |||||| || ||
Sbjct 14564 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 14623
Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 14624 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 14683
Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633
||| || | ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 14684 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 14743
Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 14744 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 14803
Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747
|| | || ||||| ||| |||||| || || || |||||||||| |
Sbjct 14804 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 14860
Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807
| || ||||| ||||| || || | || | |||||| || || ||| ||
Sbjct 14861 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 14920
Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 14921 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 14980
Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 14981 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 15040
Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969
||| ||||| || |||| || ||||| || ||||| ||
Sbjct 15041 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15082
>seq452
Length=12024
Score = 143 bits (158), Expect = 3e-29
Identities = 296/432 (69%), Gaps = 14/432 (3%)
Strand=Plus/Plus
Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684
||| ||||||||||| || | ||||| | | |||||||| | || |||||| || |
Sbjct 3481 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3540
Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| ||
Sbjct 3541 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3599
Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802
| | ||||| |||| | ||| ||| ||| |||||||||||||| | | ||
Sbjct 3600 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 3658
Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862
|||||||||||||| ||||| ||||||||||| || || || || || || |||
Sbjct 3659 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3718
Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918
||||| || ||| | || || || ||||| | ||| | | |
Sbjct 3719 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 3774
Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977
|||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| |
Sbjct 3775 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 3833
Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037
|||| | ||||||| | ||| ||| || | | || || | ||| ||| ||||
Sbjct 3834 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 3893
Query 182038 GACCATCCGCCA 182049
|||| || ||||
Sbjct 3894 GACCGTCGGCCA 3905
>seq620
Length=90608
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| ||||| || || || || || |||||| |||||
Sbjct 63777 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63836
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776
||||||||||| |||||||| | ||| | || | ||| ||| || || ||||||||||
Sbjct 63837 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 63895
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|||||||||| ||||| |||| || || ||| ||||
Sbjct 63896 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 63935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628023129048000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |