Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq523 192 7e-44
seq620 161 1e-34
seq452 98.7 1e-15
>seq523
Length=111003
Score = 192 bits (212), Expect = 7e-44
Identities = 805/1255 (64%), Gaps = 37/1255 (3%)
Strand=Plus/Minus
Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395
|| ||||| || ||||| || ||||||||||||| |||||||| | |||| |||
Sbjct 15082 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15023
Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 15022 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14963
Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 14962 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14903
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| |||||| | || | || || ||||| ||||| || | | |||||||||| ||
Sbjct 14902 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14843
Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629
|| || |||||| ||| ||||| || | |||| |||||||||||||
Sbjct 14842 TACGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 14786
Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689
|||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 14785 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14726
Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
|| || ||||| |||| ||| |||||||| | ||||| ||||||||| | || ||
Sbjct 14725 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14666
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
||| ||||| |||| | ||||| | | || ||||| || |||| |
Sbjct 14665 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14606
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868
||||| || |||||| ||||| | ||||| || | ||| | | || | ||
Sbjct 14605 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAAAC 14547
Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
| ||| | || | | ||| || || ||| || ||||||||||||||||| |
Sbjct 14546 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 14488
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| ||||| ||||| || || ||| ||| || |||||| | | ||| |
Sbjct 14487 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 14428
Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044
|||| ||| || |||||||| |||||| |||| | | | ||||| |
Sbjct 14427 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 14371
Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103
|||| ||||| || || || | ||||| || | || || || | || |
Sbjct 14370 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCGTC 14312
Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| ||| | |||| || ||||| |||| || ||| || || ||||| ||| ||
Sbjct 14311 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTA 14252
Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
|| | || | || || || |||| || || || || || ||| | || ||
Sbjct 14251 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGG 14195
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280
|| ||||||| ||||| |||||||| || || | ||||| |||| | ||
Sbjct 14194 CCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 14135
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| |||| || || | |||| ||||| | || || ||||| || || ||||| ||
Sbjct 14134 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCG 14075
Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
||||||||| | || | || |||| |||| | |||||| | | || ||||||
Sbjct 14074 CTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 14015
Query 105401 CCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTG---AGACCAAGCTTC 105455
|| | || | ||||| | ||||| | || ||||||| ||| ||| | |||
Sbjct 14014 CC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTT- 13958
Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515
| |||||| || || |||| ||| |||| ||| | | ||| | | |
Sbjct 13957 --TGGGACTGGACAGAGCTGAAGGCCAAGATCGCACAGAACGGTGTGAGGAACTCTTTGC 13900
Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570
|| | || || ||||| || ||||| || | |||||||||||| || |||||
Sbjct 13899 TCGTCGCCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGGTTGGAACGAATG 13845
>seq620
Length=90608
Score = 161 bits (178), Expect = 1e-34
Identities = 214/289 (74%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 64061 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 64003
Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 64002 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 63943
Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 63942 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 63886
Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906
|||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| ||
Sbjct 63885 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 63827
Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 63826 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 63778
>seq452
Length=12024
Score = 98.7 bits (108), Expect = 1e-15
Identities = 281/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 3481 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3540
Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 3541 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 3600
Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 3601 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 3659
Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 3660 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 3719
Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 3720 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 3779
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 3780 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 3838
Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694
| |||| || | ||| || | | | |||||| || || ||| ||||||||
Sbjct 3839 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 3898
Query 168695 TCCGCCA 168701
|| ||||
Sbjct 3899 TCGGCCA 3905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583252561441200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |