Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq523 228 9e-55 seq620 113 5e-20 seq636 82.4 8e-11 >seq523 Length=111003 Score = 228 bits (252), Expect = 9e-55 Identities = 801/1237 (65%), Gaps = 34/1237 (3%) Strand=Plus/Minus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 ||||||||||||||||| | || || ||||| || ||||| ||||| |||||| Sbjct 15082 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15023 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 |||||| |||||| || |||||||| || |||||| || || || ||||||||| Sbjct 15022 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14963 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||| ||||| || | ||| | | | |||||||| ||| || | || || Sbjct 14962 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14904 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || || || || |||| ||| | || |||||||| | | | || ||| || | Sbjct 14903 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14844 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| | || || || ||| || || | ||||||||||| || ||||| || Sbjct 14843 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14784 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | || ||| | || | | |||||| ||| | |||||| | || Sbjct 14783 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14724 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||| || || ||| ||| | ||||| | || || |||||| || || || Sbjct 14723 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 14664 Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| || ||||| ||||| ||| |||||||| || ||||||| |||| Sbjct 14663 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 14605 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 | || | || | || | || || |||| |||||| | | ||| Sbjct 14604 GTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 14545 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || |||| | | | ||| | | ||||| | || |||||| || || | Sbjct 14544 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 14485 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| ||||||||||| || || ||| ||||||| || || ||| || | || | |||| Sbjct 14484 ACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 14425 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 | || ||||| |||||||||||||||||| ||| || || || ||| || | Sbjct 14424 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 14365 Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985 ||||||| || || || ||| || || | ||||| || ||| | || || | Sbjct 14364 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTGGAACGTCGCGTCTATG 14308 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| || || ||||| | ||| ||| || || || || | || ||| Sbjct 14307 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 14248 Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 || |||| || || | | || ||| ||||| || || |||||||| ||||| Sbjct 14247 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGGCCTG 14191 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162 | | | || |||||||| || ||||||| ||||||| || || | | |||||| Sbjct 14190 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 14131 Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222 | |||| | || ||||| | ||||||||| | | ||||||||||| || Sbjct 14130 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCGCTTG 14071 Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 || || |||||||| ||| | ||| || | || || | | | | || || ||| Sbjct 14070 AGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 14011 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336 || |||||||||| ||| ||||||||||| ||| ||| || | | | Sbjct 14010 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 13951 Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 ||| | || |||| ||||| ||| |||| | | ||||| |||||||||| Sbjct 13950 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 13894 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | || ||||| || ||||| || | || ||| |||| Sbjct 13893 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 13857 Score = 206 bits (228), Expect = 3e-48 Identities = 792/1232 (64%), Gaps = 24/1232 (2%) Strand=Plus/Plus Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633 |||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | | Sbjct 13857 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 13916 Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687 || | | ||||| | |||| || | |||||||| || | | | Sbjct 13917 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 13976 Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| ||||||||||||| || || || || | | | | || || Sbjct 13977 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 14036 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807 | || ||||| ||| |||||||||||| | || ||||||||||| | | |||| Sbjct 14037 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 14096 Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867 ||||| | ||||| || | |||| | |||||||| | || || |||| Sbjct 14097 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 14156 Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927 || | ||||| || |||||||| || | | | | || || |||||||||||| || Sbjct 14157 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTG 14216 Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 |||||| || | | || || |||| || ||| || || ||||| || Sbjct 14217 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTA 14273 Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GAT-TTCCT--TTGATG 79038 || ||| || | ||||| || || ||| ||| | || |||| | | | Sbjct 14274 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACG 14333 Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097 || | || || ||| || || || || || || || || || || || |||| Sbjct 14334 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14392 Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| |||||||| || || | ||| || |||||||| || | || ||| |||||| Sbjct 14393 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14452 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||| ||| || ||||||||||| ||||| || || ||||| ||| || Sbjct 14453 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14512 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 ||| | | || ||| | | | |||| || | ||| | | ||||| | Sbjct 14513 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14572 Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337 ||| || || | || | || | || || || || |||| || || |||||||| Sbjct 14573 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14632 Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 | ||||| ||||| || ||| ||| | || || || || |||||| || || | Sbjct 14633 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14691 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 |||||| ||||| ||| || || || || | |||||| | || |||||| | Sbjct 14692 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14751 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 | || | ||||| | | || |||||||| ||||| |||||||||||||| | || Sbjct 14752 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14811 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 | |||||| || || || | ||||| || || ||| || | || ||||||||| Sbjct 14812 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14871 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | || | |||||||| || | || || || ||| || | || |||| || | Sbjct 14872 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 14931 Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 | || | | | ||| | || || || |||| ||||||||| || || || |||| Sbjct 14932 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 14990 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 || || |||||||| || || || ||||| |||||||| || || |||||||| ||| Sbjct 14991 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 15050 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 || || || | |||||||||||||| || Sbjct 15051 ATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15082 >seq620 Length=90608 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||||| |||||||| |||||| || |||||||||||||| || ||| | || Sbjct 63926 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63867 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || ||||| || |||||||| || || | ||||| |||||||| || || Sbjct 63866 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCT 63807 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 63806 CGAGACGAGGGTCTCCA 63790 >seq636 Length=267295 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||||||||||||||| || ||||| ||||| || || ||| || |||||| | Sbjct 36932 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 36873 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || | ||||| || |||| || || |||||| |||| |||| ||| Sbjct 36872 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGATGAG 36813 Query 60111 GGCCTCCAT-CAG-GAGTT 60127 || | ||| ||| ||||| Sbjct 36812 GGGATGCATACAGTGAGTT 36794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517052087200