Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq613 84.2 2e-11
>seq613
Length=256775
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836
|| |||| |||||||| || | | | |||| |||||| || || ||| | ||
Sbjct 7801 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 7860
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
||||||| || ||||| ||||| |||| | || |||||| | ||| |
Sbjct 7861 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCGCCGTCGGCATCAG 7920
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955
||||| || ||||| |||||||||||||||||||| || || |||| || || | ||
Sbjct 7921 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 7980
Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
| | | ||| || ||| ||| ||||| || ||| |||| | | |||||||
Sbjct 7981 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGA 8037
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
|| || ||| | |||||| |||||| || || || |||||||||| |
Sbjct 8038 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 8097
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
|||| | | ||||| | | || ||||| |||||||| || ||||
Sbjct 8098 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 8148
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| || |||||||| ||||| || | | ||||| | | ||||| ||||||
Sbjct 8148 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 8089
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
|||| || || || |||||| |||||| | ||| || ||||||||| |
Sbjct 8088 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 8029
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397
| |||| ||| || ||||| ||| ||| || ||| | | ||| | || |
Sbjct 8028 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 7972
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
| |||| || || |||||||||||||||||||| ||||| || ||||| | ||
Sbjct 7971 ATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 7912
Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517
| | |||||| || | |||| ||||| ||||| || ||||||||| | |||
Sbjct 7911 ACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 7852
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568
|| || |||||| |||| | | | || |||||||| |||| ||
Sbjct 7851 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 7801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448256068293600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |