Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
85.1_202017-04-19] 1,130 sequences; 18,446,098 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq620 100 2e-16
>seq620
Length=90608
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| ||
Sbjct 78173 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG 78114
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| || || || || || || | ||||||||||| | || | | ||| |||
Sbjct 78113 TCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 78054
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||| || |||| | | | ||||||||||| || || || | || ||
Sbjct 78053 TCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATG 77994
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || || || ||||| || |||||||||||
Sbjct 77993 GTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77959
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| |
Sbjct 78961 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCA 78902
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| ||||| || || || || || || ||||| || | ||| | | ||| |||
Sbjct 78901 TCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTG 78842
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|| ||| || |||| ||| | | | ||||||||||| || || || | |||||
Sbjct 78841 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGAT 78783
Query 39249 ACTTTTTCCCGTCAG 39263
| || ||||| ||
Sbjct 78782 TGTCTTACCCGTAAG 78768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429539684351690
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |