Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq428 134 2e-26
seq809 118 1e-21
seq279 84.2 3e-11
>seq428
Length=224880
Score = 134 bits (148), Expect = 2e-26
Identities = 182/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| || || ||| ||| ||||||||||||| | || | ||||| || || || ||
Sbjct 16202 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 16143
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 16142 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 16083
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATG 24310
|| || || || || ||||| ||||| |||| || || ||| | | ||||
Sbjct 16082 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 16023
Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 16022 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 15963
Query 24371 AAAGAGATAGTTT 24383
|||||| |||||
Sbjct 15962 AAAGAGGAAGTTT 15950
>seq809
Length=99032
Score = 118 bits (130), Expect = 1e-21
Identities = 488/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009
|||||| || || || |||| | | | | |||||| || || | |||||||| | |
Sbjct 14950 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 15009
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 15010 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 15069
Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 54127
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 15070 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 15127
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187
| | ||||| ||||| || || | || |||| | | ||||| || ||||| ||
Sbjct 15128 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 15187
Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 15188 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 15247
Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 54306
|| ||||||||| |||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 15248 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 15306
Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 15307 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15366
Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426
|| || |||||| ||||| | || || || ||||||||| | || |||
Sbjct 15367 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15426
Query 54427 TCCCGCATTAAATA---------------------AG----------------------- 54442
|| || || || | ||
Sbjct 15427 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15486
Query 54443 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAG 54497
||||| ||||| || || || | | ||||| | ||||| || ||||||||
Sbjct 15487 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15546
Query 54498 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 54557
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15547 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15606
Query 54558 TTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617
|| || |||||| || || | || | ||| ||| | || | ||| || ||||| |
Sbjct 15607 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15666
Query 54618 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15667 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15721
>seq279
Length=236649
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215
||||| || ||||| || || ||||| ||||| || ||||| ||||| | || | |||
Sbjct 36833 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 36892
Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275
|| | ||| || || | ||||| || |||||||||||||| ||||| || |||||
Sbjct 36893 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 36952
Query 24276 GCAATAAGTCT 24286
|| | |||||
Sbjct 36953 GCCACCAGTCT 36963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593713354691280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |