Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq428 147 2e-30
>seq428
Length=224880
Score = 147 bits (162), Expect = 2e-30
Identities = 182/249 (73%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011
|||| || || || || || || || | |||||||||| ||||| || || ||||||
Sbjct 15964 ACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 16023
Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071
| | | | | | ||||||||||| || | || || || ||||| ||||| |||
Sbjct 16024 CTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCT 16083
Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
|||| || || |||||| |||| || ||||| ||||| || || |||||||| || |
Sbjct 16084 TCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTC 16143
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
| || ||| |||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 16144 TTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTC 16203
Query 117192 TGCTGTTCA 117200
| || ||||
Sbjct 16204 TCCTCTTCA 16212
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| ||||||||||| ||| | || |||||| | | |
Sbjct 2017 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1958
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||||| || || | ||||| ||||| ||||| | ||||||
Sbjct 1957 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1898
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| || || || || || |||| || || || ||| |||||
Sbjct 1897 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1838
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| |||| || ||||| || |||||
Sbjct 1837 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCG 1803
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770
|| ||||| || || ||||| | || |||||| | | ||| | | | | | |||||
Sbjct 1208 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 1149
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
| || || | ||||| ||||| |||||| | || |||||||||||||||| ||| ||
Sbjct 1148 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 1089
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||| || || || | || || || ||| ||||| || || |||||| |||| ||
Sbjct 1088 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTC 1029
Query 40891 CATCTAGTGTTGCG 40904
||||| || |||||
Sbjct 1028 CATCTCGTCTTGCG 1015
Score = 82.4 bits (90), Expect = 8e-11
Identities = 125/178 (70%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || || ||||| | || || || | ||
Sbjct 2296 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 2237
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| ||||| ||||| | ||||||
Sbjct 2236 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 2177
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||||| | |||| || || || ||||| || || | | || ||| ||||||||
Sbjct 2176 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 2119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212044893360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |