Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq428 143 3e-29
seq809 109 7e-19
>seq428
Length=224880
Score = 143 bits (158), Expect = 3e-29
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| ||||||||||||| | || | |||||||| || || ||
Sbjct 16202 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 16143
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| || || ||||| |||||||| || ||||| ||||| || || || |||||
Sbjct 16142 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 16083
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 16082 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 16023
Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 16022 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 15963
Query 33818 AAAGAGATAGTTT 33830
|||||| |||||
Sbjct 15962 AAAGAGGAAGTTT 15950
>seq809
Length=99032
Score = 109 bits (120), Expect = 7e-19
Identities = 594/953 (62%), Gaps = 69/953 (7%)
Strand=Plus/Plus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
||| || || || || |||| | | | | || ||| || || | |||||||| | |
Sbjct 14950 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 15009
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 15010 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 15069
Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 15070 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 15127
Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 15128 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 15187
Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 15188 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 15247
Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 15248 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 15306
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
||| || || || || | || ||||| || || || | || || ||||| ||
Sbjct 15307 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15366
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664
|| ||| ||||| ||||| | || || || ||||||||| | || | |||
Sbjct 15367 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15426
Query 63665 TCCCGCATTAAA------------------------------------------------ 63676
|| || || ||
Sbjct 15427 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15486
Query 63677 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735
|| ||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 15487 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15546
Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15547 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15606
Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855
|| ||||| ||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15607 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15666
Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915
| |||||||| | |||||||| || || |||||| | || | ||| ||||||| |
Sbjct 15667 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 15723
Query 63916 TGTTAACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 63970
||| | | | || || || || | ||| || |||||||| || || | ||
Sbjct 15724 TGTCCATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTT 15781
Query 63971 AGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028
|| || || | || || || || | | || || || | || || || |||
Sbjct 15782 GGGGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCC 15839
Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|| || || || || || || |||| ||| || || || ||||||||||||||
Sbjct 15840 TTATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 15892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629808853408080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |