Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq428 140 5e-28
seq809 127 3e-24
seq279 86.0 9e-12
>seq428
Length=224880
Score = 140 bits (154), Expect = 5e-28
Identities = 183/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || ||| ||| ||||||||||||| | || || ||||| || || || ||
Sbjct 16202 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 16143
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 16142 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 16083
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135
||| || || || || ||||| |||| |||| ||| || ||| | | ||||
Sbjct 16082 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 16023
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 16022 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 15963
Query 50196 AAAGAGATAGTTT 50208
|||||| |||||
Sbjct 15962 AAAGAGGAAGTTT 15950
>seq809
Length=99032
Score = 127 bits (140), Expect = 3e-24
Identities = 490/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
||| || || || || |||| ||| | | |||||| || ||| | |||||||| | |
Sbjct 14950 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 15009
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978
||| || ||||| | || || ||||| || ||||| | ||||| || || || ||
Sbjct 15010 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 15069
Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 80037
| ||||| | | || |||||| || || ||||| ||||| || | ||| |
Sbjct 15070 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 15127
Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097
| | ||||| ||||| || || | || ||||| | | || || || ||||| ||
Sbjct 15128 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 15187
Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 15188 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 15247
Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 80216
|| ||||||||| |||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 15248 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 15306
Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 15307 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15366
Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336
|| ||| ||||| ||||| | || || || ||||||||| | || |||
Sbjct 15367 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15426
Query 80337 TCCCGCATTAAATA---------------------AG----------------------- 80352
|| || || || | ||
Sbjct 15427 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15486
Query 80353 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407
||||| ||||| || || || | | ||||||| ||||| || ||||| ||
Sbjct 15487 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15546
Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467
|| || || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15547 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15606
Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527
|| || |||||| ||| || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15607 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15666
Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15667 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15721
>seq279
Length=236649
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034
|||| ||||| || ||||| || | ||||| ||||| || ||||| ||||| | ||
Sbjct 36827 TGCATCCCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCT 36886
Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094
| ||| || | ||| || || | ||||| |||||||||||||| || ||||| ||
Sbjct 36887 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 36946
Query 50095 GCAAAGGCAACAAGTCT 50111
||||| || || |||||
Sbjct 36947 GCAAAAGCCACCAGTCT 36963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718258825042040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |