Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq428 131 2e-25
seq279 86.0 8e-12
>seq428
Length=224880
Score = 131 bits (144), Expect = 2e-25
Identities = 181/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || ||| ||| |||||||| |||| | || | ||||| || || || ||
Sbjct 16202 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 16143
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183
|| ||||| || || ||||| |||||||| || || ||||| || || ||||| |||||
Sbjct 16142 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 16083
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 42240
||| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 16082 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 16023
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 16022 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 15963
Query 42301 AAAGAGATAGTTT 42313
|||||| |||||
Sbjct 15962 AAAGAGGAAGTTT 15950
>seq279
Length=236649
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139
|||| |||||||| ||||| || || ||||| ||||| || ||||| ||||| | ||
Sbjct 36827 TGCATCCCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCT 36886
Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199
| ||| || | ||| || || | ||||| || ||||||||||| || ||||| ||
Sbjct 36887 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 36946
Query 42200 GCAAAGGCAATAAGTCT 42216
||||| || | |||||
Sbjct 36947 GCAAAAGCCACCAGTCT 36963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671129879554360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |