Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq809 235 1e-56 >seq809 Length=99032 Score = 235 bits (260), Expect = 1e-56 Identities = 641/978 (66%), Gaps = 14/978 (1%) Strand=Plus/Minus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 || || ||||| || ||||| || | |||||||| || ||||| || ||||||| Sbjct 15417 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 15358 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 || || || |||| ||||||| || ||||||| ||| || || |||||| | || Sbjct 15357 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 15298 Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771 |||||| | ||||| || | |||||| ||| || || ||||| || || | Sbjct 15297 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 15238 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 |||| ||||| || | | ||| || || | ||||| || || ||||| ||| Sbjct 15237 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 15178 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || || || || ||||| |||||| || || ||| | ||||| || || Sbjct 15177 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 15118 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||| ||| || || ||||| | || || |||||||| ||||| || || Sbjct 15117 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 15058 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010 ||| | || || | ||| |||||||| || || | | | | ||||| |||||| || Sbjct 15057 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 15000 Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||| | ||| || || || ||| |||| || | ||||| || | || || || Sbjct 14999 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14941 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || | || || | |||| |||| | || || || || |||||||| ||||| Sbjct 14940 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14881 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || | || | ||||| || || || || | ||||| ||| | | Sbjct 14880 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14821 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 ||| |||||||||||| ||||||||||||| || | || ||||| ||||| || Sbjct 14820 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14761 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || || || || | |||| || || ||| || ||||| ||||| || | || ||| Sbjct 14760 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14701 Query 364309 CCGGCGTTTGTAAAAGATGGTAC-------TTTTGACCACCAGCATCTTTATGACGTAAC 364361 || || || || | | ||| || | |||| | | | || | || | || Sbjct 14700 CCTGCCTTCGT-AGACCTGGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTAC 14642 Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421 | | || ||| || || |||| || ||| | || || |||||| | ||||| Sbjct 14641 CAAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGA 14582 Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 ||| || || ||||| ||||| || ||||||||||||| ||||| || || || Sbjct 14581 GGCCCGCAACTCCAACATGCGCCATCGGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGA 14522 Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541 || ||| ||| || ||| | || || || |||| ||| | | || |||| | Sbjct 14521 CGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCA 14462 Query 364542 GATCTTTGAAACAATGTA 364559 |||||| || || || || Sbjct 14461 GATCTTCGAGACGATATA 14444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303335047168802