Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq428 170 4e-37
seq187 104 4e-17
seq359 102 2e-16
seq846 100 5e-16
>seq428
Length=224880
Score = 170 bits (188), Expect = 4e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| |||||||| || ||||||||
Sbjct 1791 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1850
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | || || ||||| || ||
Sbjct 1851 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1910
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| ||
Sbjct 1911 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 1969
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | ||| |||||||| || |||||||| |||||||| || |||||
Sbjct 1970 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2017
Score = 141 bits (156), Expect = 2e-28
Identities = 157/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 1003 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1062
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | || || |||||||| ||||||| ||| || || || ||
Sbjct 1063 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1122
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| ||
Sbjct 1123 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 1181
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440
||| | ||||| || || ||||| ||
Sbjct 1182 TTCAAGAGTGATTGTCTTACCCGTAAG 1208
Score = 138 bits (152), Expect = 2e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| ||||| |||||||| | |||||| || || || || | || ||| |||
Sbjct 2121 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 2180
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 2181 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 2240
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 2241 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2296
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || || || ||||||||||| || |||||
Sbjct 1284 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 1343
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || || || || || | || ||| || || || |||
Sbjct 1344 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 1403
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || |||
Sbjct 1404 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 1463
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | |||||||| || ||||||||
Sbjct 1464 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1510
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
||||| || | || | ||||| || | ||||| |||||||| || | || |||||||
Sbjct 1614 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1673
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| |||||||| |||||||| || |||||||| |
Sbjct 1674 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1733
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 1734 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1789
>seq187
Length=80745
Score = 104 bits (114), Expect = 4e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || ||||| || || || | |||||| |||||||| || | || ||||||
Sbjct 65842 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 65901
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| | |||||| ||||||||||| |
Sbjct 65902 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 65961
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || | ||||||||| ||||| || ||
Sbjct 65962 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 65996
>seq359
Length=11353
Score = 102 bits (112), Expect = 2e-16
Identities = 266/401 (66%), Gaps = 10/401 (2%)
Strand=Plus/Minus
Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191
|||||| | | || || |||||||| || || || || | | |||||| ||||
Sbjct 7880 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 7821
Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251
| || || || |||||| || | || || | | | || | ||||||||||||
Sbjct 7820 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 7761
Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311
| ||||| || ||| || || || ||| || | ||| ||||| ||| |||
Sbjct 7760 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 7701
Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371
|||| ||||||||| || || ||| ||| ||| || | ||||| |||| | |
Sbjct 7700 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 7645
Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427
|| | || || || || |||||||| ||| ||||| ||| ||||||| ||
Sbjct 7644 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 7585
Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486
| ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| |||
Sbjct 7584 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 7526
Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|| || || ||||| ||| | || || ||||| || ||
Sbjct 7525 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 7485
>seq846
Length=185853
Score = 100 bits (110), Expect = 5e-16
Identities = 441/683 (65%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| | ||||||| ||| || ||| |||||||| ||||| |||||||||
Sbjct 53605 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 53664
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACA-GAGCCCCGAG- 225095
|| || ||||| ||||| | ||| || ||| || |||||||| || || | || ||
Sbjct 53665 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 53724
Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154
| || | | ||| || ||||||| ||| | || |||| || || | ||| |||||
Sbjct 53725 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 53784
Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGT-----TGCTGA 225206
|||| | | ||| || ||||| | | ||||| ||| | ||| |||||
Sbjct 53785 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 53843
Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266
||| || |||| |||| || | ||| |||| ||| | | | |
Sbjct 53844 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 53899
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACC-G 225323
|||| | | | ||| || |||| || | || | || ||| | ||| | |
Sbjct 53900 CCTTAGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 53959
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | | || | |||||| || |||||| ||| | || |||||| | |||
Sbjct 53960 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTGG-ACGAAATCCTCAAGG 54018
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || ||| | || | | ||||| ||| || | | |||| | || ||| |
Sbjct 54019 TTACCAGGGTACCTCTTCAACTTGAAGTTGTTAAGATGAAGAAC----GTCGGTAACAGT 54074
Query 225443 GCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499
|| | ||||||| |||||||||| || ||||||||||| | ||| || || |||
Sbjct 54075 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 54132
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| | |||| ||||| | ||||| || |||| |||||| ||||| |||||
Sbjct 54133 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 54192
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| | ||||| || || | | ||| || || || | |||| |||||||| ||||||
Sbjct 54193 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAG 54252
Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642
|| || || || || || || ||
Sbjct 54253 CCGCCAGAAAGAGAACCAATGGA 54275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921609600968920
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