Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq428 158 1e-33 >seq428 Length=224880 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | |||||| || ||||| | || |||||||||||||||||| ||||| Sbjct 1791 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1850 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || || ||||| |||||||| ||||| ||||||||||| | || Sbjct 1851 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1910 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | || ||||||||||| || Sbjct 1911 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 1970 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||||||||| || || ||||| || ||||||||||| Sbjct 1971 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2017 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | |||||| || ||||| | || ||||||||| |||||||| ||||| Sbjct 1003 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1062 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || || || || |||||||| || | || ||||| || | || Sbjct 1063 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1122 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | || ||||||||||| || Sbjct 1123 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACT 1182 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAG 46572 || | ||||| || || ||||| || Sbjct 1183 TCAAGAGTGATTGTCTTACCCGTAAG 1208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| ||||| || | || || || || || || || || Sbjct 1320 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1379 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | | ||||||||| |||||| ||| | ||| Sbjct 1380 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTT-AACGTT 1438 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||| || || || | ||||| || || || |||| || || || Sbjct 1439 GTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 1498 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 1499 AAAGATCTGCAT 1510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565230550251720