Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq428 118 1e-21 >seq428 Length=224880 Score = 118 bits (130), Expect = 1e-21 Identities = 222/323 (69%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||| || | |||||||| | || ||||| ||||| ||| || | Sbjct 16201 CAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGA 16142 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| || || || || ||||| || |||| |||||| || || |||||| Sbjct 16141 CCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAG 16082 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||||| ||||| || ||||| | || ||||||||||| | || || | | | Sbjct 16081 ATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGAG 16022 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| || || ||||| |||||||| | | || || || || || || || ||| || Sbjct 16021 ATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCG-TC 15963 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACG-----CACGTAGGTGTCGATGAGGGTCGAAT 133189 || | | | |||||| |||| | | | |||||||||||||||| || | Sbjct 15962 AA-AGAGGAAGTTTC---GTCGAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAGT 15907 Query 133190 ACATTTCCGAGTGTACGTTCTCC 133212 | | || | ||| | ||||||| Sbjct 15906 AGGTCTCGGCGTGGATGTTCTCC 15884 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||||||||| ||| | || ||||| | | | Sbjct 2017 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1958 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 1957 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1898 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || || || || |||| || || || ||| ||||| Sbjct 1897 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1838 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || ||| | || ||||| | |||| || Sbjct 1837 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGAGGTGG 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165853850240