Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq809 129 7e-25
seq1065 123 3e-23
seq880 93.3 5e-14
seq293 91.5 2e-13
seq359 84.2 3e-11
>seq809
Length=99032
Score = 129 bits (142), Expect = 7e-25
Identities = 703/1115 (63%), Gaps = 23/1115 (2%)
Strand=Plus/Plus
Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929
||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| |
Sbjct 14337 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14396
Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989
||| || ||||||||||| || |||| || || | |||||||| || || ||||
Sbjct 14397 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14456
Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049
| || | || ||||||| || | || | || |||| | ||| | | || |
Sbjct 14457 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14516
Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109
| |||| || |||||||| ||||||| ||| | || | || ||||| || || |||
Sbjct 14517 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA--GTT 14574
Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167
| | | || ||| || |||| || || ||| | ||| ||||||
Sbjct 14575 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14634
Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224
| || |||| | || || | || || || || || || ||| | || ||
Sbjct 14635 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGG--TCTAC 14691
Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284
| | || | || | || || |||||||| || || ||| || | | | |
Sbjct 14692 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14751
Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344
||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| ||
Sbjct 14752 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14811
Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404
||| || || || ||||| || || ||| || || || |||| | |
Sbjct 14812 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14871
Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464
| || || ||||| || | ||| | | ||| || | | || | ||
Sbjct 14872 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14931
Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524
||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || ||
Sbjct 14932 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14991
Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584
| ||||| | | | ||||| ||||||||||| || || |||||||| | ||| |
Sbjct 14992 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 15051
Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642
||||| | ||| | || || || ||| |||| |||| || | ||| || |||
Sbjct 15052 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 15109
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
| | || | || || | | ||| |||||||| || || | ||||| || | |
Sbjct 15110 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 15169
Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756
|| | ||||| || |||||| || |||| || || | || || ||||
Sbjct 15170 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 15226
Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816
| ||| ||||| || || | ||| ||||| || || ||| | || || |||
Sbjct 15227 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 15286
Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876
|| | || ||||| ||| | |||||||| || || ||| ||| | |||||
Sbjct 15287 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 15346
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
|| | |||||||| ||||| || || || ||||| | || | ||||| || |||
Sbjct 15347 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 15406
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||||| |||| ||| ||||| || ||||| ||
Sbjct 15407 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15441
>seq1065
Length=34298
Score = 123 bits (136), Expect = 3e-23
Identities = 267/395 (68%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390
||||| | |||||||| || |||||||| || | || || || || | ||||| | |
Sbjct 18762 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 18821
Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450
| | || || || ||| || | || ||||| | |||||| ||||||
Sbjct 18822 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 18881
Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510
| ||||| || |||||||| | || || || || || || || ||||| |||
Sbjct 18882 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 18941
Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568
| ||| || | |||| | | | || ||||| || ||||||||||||| ||| || |
Sbjct 18942 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 18999
Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
|||| ||||| || || || | |||| || |||||||| || ||||| || || |
Sbjct 19000 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 19059
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| ||||| || |||||||| || || || || || ||||| | | || || || ||
Sbjct 19060 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 19118
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|| | || || || ||||| |||||||| || ||
Sbjct 19119 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 19153
>seq880
Length=64875
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| ||||| | | ||| | ||||| ||| | || |||| ||| ||||||||
Sbjct 243 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 302
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || | ||||| || |||||||| ||||| | ||||||||||| ||||||||
Sbjct 303 CCAATCAATCGCTTGGCGTCAAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 362
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || || | || | || |||||||| || || || |||
Sbjct 363 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 419
Query 8057 CGATTCCCTTGGTCGTTCGC 8076
|| || || |||||||||||
Sbjct 420 CGGTTACCCTGGTCGTTCGC 439
>seq293
Length=10870
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135
||||||||||||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 10373 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACATGAATAGGTAGTGCCCAAGT 10314
Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160
|||||||||| |||| ||||| ||
Sbjct 10313 CAATACCGATAGCTTTTGTCATGTT 10289
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||| ||||| | | ||||| ||||| ||| | || || | || ||| || |
Sbjct 10625 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAATTTACG 10566
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
||||| | ||||| ||||| ||||| ||||| | || ||||| || |||||||||
Sbjct 10565 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 10506
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
||| || || |||||||| ||||| | || | || || || || ||||| || ||
Sbjct 10505 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 10449
Query 8056 TCGATTCCCTTGGTCGTTCGC 8076
|||||| || || ||||| ||
Sbjct 10448 TCGATTGCCCTGATCGTTGGC 10428
Score = 82.4 bits (90), Expect = 1e-10
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 7685 GTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744
|| || || ||||| || ||||| |||||||| ||||| || || || || | | |||
Sbjct 10870 GTAGCCTGACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACG 10811
Query 7745 TTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC 7804
| |||||| || | || || | || ||||| || ||||||||||| || ||||||
Sbjct 10810 GTGCCACCGAGGTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATC 10751
Query 7805 TCTTCAGCCG 7814
||||||| ||
Sbjct 10750 TCTTCAGGCG 10741
>seq359
Length=11353
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397
|||||||||||||| ||||| ||||||||||| || || || || | ||| ||
Sbjct 7747 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7688
Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457
|| || || || || |||||||| ||||| || | |||| | |||||
Sbjct 7687 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 7628
Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516
|| |||||||| | ||||| ||||||||||| |||| | || || ||||| |||||
Sbjct 7627 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635123979593240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |