Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq428 118 9e-21
seq293 109 4e-18
seq192 96.9 3e-14
>seq428
Length=224880
Score = 118 bits (130), Expect = 9e-21
Identities = 162/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| ||||| ||||||||| ||| ||||| || ||||| || | ||||| |
Sbjct 1293 AGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 1350
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| ||||||||||| || |||||||| | || |||||||||||||||||| ||||
Sbjct 1351 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 1410
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || || ||||| || || || || || || |||| || | | |||||||
Sbjct 1411 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCGAGA 1469
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||| || || || | ||| || || || || ||||||
Sbjct 1470 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 1511
Score = 102 bits (112), Expect = 7e-16
Identities = 159/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| || || ||| ||||| ||||||||||| | ||||||
Sbjct 1799 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 1856
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||| |||||||| ||||| | || ||||| |||||||| || ||
Sbjct 1857 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 1916
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || ||||| || || || || || || ||||| | || | | ||| ||
Sbjct 1917 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGACTTCAAG 1975
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||||| || || || ||||| ||||| |||||||||
Sbjct 1976 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 2018
Score = 98.7 bits (108), Expect = 8e-15
Identities = 105/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| || || ||| |||| |||||||||||| | ||||||
Sbjct 1011 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 1068
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 1069 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 1128
Query 563374 TCTTTATCTTGAATTTT 563390
|| || ||||| || ||
Sbjct 1129 TCCTTGTCTTGGATCTT 1145
>seq293
Length=10870
Score = 109 bits (120), Expect = 4e-18
Identities = 142/192 (74%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122
||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| |
Sbjct 10428 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 10487
Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180
||| | |||||||| || || | |||| || || |||||| ||| ||| ||||
Sbjct 10488 CTTA-TCGGTGATGCCGCGAAGAACCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 10544
Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240
|||||||| || || || || | | ||||| ||| | |||||||| || ||||||
Sbjct 10545 GATGCTAAGCGGTTGATCGGCCGTAAATTTAACGATGCCGAAGTTCAGGCCGACATGAAG 10604
Query 550241 CATTGGCCTTTC 550252
||||||||||||
Sbjct 10605 CATTGGCCTTTC 10616
>seq192
Length=57817
Score = 96.9 bits (106), Expect = 3e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||||||||| | || || | ||| || | | ||| || ||| ||||
Sbjct 22305 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 22364
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 22365 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 22424
Query 390975 CATAACTTGGAAGAAAAATTC 390995
|||| | ||||| | |||||
Sbjct 22425 CATAGCGTGGAACCAGAATTC 22445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029237245309390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |