Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq428 111 2e-19 seq187 93.3 4e-14 >seq428 Length=224880 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| || || |||||||||||| | || || || || || || ||||| | Sbjct 1821 GTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 1878 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| |||||||| || |||||||| |||||| || Sbjct 1879 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 1938 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || ||| | | || || || | ||| | |||||||||||| || | Sbjct 1939 TGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 1998 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 1999 TTTTGACGAAGATTTGCAT 2017 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || ||| | || | || || ||||| |||||||| || |||||| Sbjct 1635 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 1694 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | || || || || | |||| Sbjct 1695 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 1754 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| || |||||||||||||| Sbjct 1755 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1789 >seq187 Length=80745 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | ||||| ||||| || ||||| || ||||| Sbjct 65862 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGGATACCCTCCTT 65921 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || |||| ||||| Sbjct 65922 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGAT 65981 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 65982 GGTCTTTCCGGTAAGA 65997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414086493640