Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq428 107 2e-18
>seq428
Length=224880
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| || |||||||||| | ||||| |||| || || ||||| || || ||
Sbjct 1826 CTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAA 1885
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||| | | ||||||||| |||||| ||| | | |
Sbjct 1886 AATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATT 1945
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||||||||||| || || | || || ||||| || || | ||||| ||
Sbjct 1946 GTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGAC 2005
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 2006 GAAGATTTGCAT 2017
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| || ||||||||||| ||||| ||||| || |||||||| | ||| | | |||||||
Sbjct 2142 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 2201
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||| |||||| ||| | | | | | |||||| || ||||| || | |||||
Sbjct 2202 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATA 2261
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||| || | ||| || || || || |||||
Sbjct 2262 GTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450787339603880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |