Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq428 181 3e-40 seq1065 91.5 4e-13 >seq428 Length=224880 Score = 181 bits (200), Expect = 3e-40 Identities = 181/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || | Sbjct 1276 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 1335 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||||||||| |||||||| || | |||||||||| Sbjct 1336 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 1395 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || || || || || || || | ||||| | Sbjct 1396 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 1455 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||||||||| | || || ||||| |||||||| Sbjct 1456 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1510 Score = 158 bits (174), Expect = 4e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| ||| Sbjct 997 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 1056 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | ||||| |||||||||||||||||||| || ||||| || |||||||||||| Sbjct 1057 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 1116 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || || || || || || || || || || || ||||| || || | ||| | | Sbjct 1117 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGAT 1176 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || |||||||| || | |||||| || || || Sbjct 1177 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 1208 Score = 147 bits (162), Expect = 7e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 |||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| || Sbjct 1614 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1673 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||||||| || || || || |||||||| || || || ||||| ||||| | ||||| Sbjct 1674 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1733 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| ||||| || | ||||||||||| || || || || ||||||||||| Sbjct 1734 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1789 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 1787 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 1846 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||||||||| ||||| || || || | || ||||| ||||| Sbjct 1847 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 1906 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || || || ||||| || || | ||| | ||| Sbjct 1907 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 1966 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| || || ||||| || ||||| || || || ||||| Sbjct 1967 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2017 Score = 114 bits (126), Expect = 4e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||||||||| || || ||||||||||| | |||||||| |||||||| || || || Sbjct 2139 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 2198 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || ||||| || || || || ||||| || || | || || | || |||||||| || Sbjct 2199 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 2258 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || || || ||||| ||||| Sbjct 2259 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2296 >seq1065 Length=34298 Score = 91.5 bits (100), Expect = 4e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || | |||||| || || || || || || |||||| Sbjct 19153 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 19094 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || ||||| |||||||| || ||||| || || ||| Sbjct 19093 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 19034 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || | | || || | || ||| | || || || || || |||||||||||||| Sbjct 19033 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 18974 Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || || || || | | | || | || || || || |||||||||| Sbjct 18973 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 18916 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || ||||||||||| || || || || || Sbjct 18915 ACACTCATCTTGGTGGTGAGGACTTCGACAA 18885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515232830827133