Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq428 185 1e-41
seq809 172 6e-38
seq279 109 6e-19
seq187 95.1 1e-14
>seq428
Length=224880
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||| |||||||| ||||| || || ||||| |
Sbjct 1510 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 1451
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||||| || |||||||||||||| || |||||||| || |||
Sbjct 1450 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1391
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | |||||||||||||| ||||| ||||||| |||||| || | ||||| ||
Sbjct 1390 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 1331
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||| || ||||| || || | ||||| || |||||
Sbjct 1330 ATCCAAAAGGAATCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 1284
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||| || || |||||||| || ||||| ||||| || || || |
Sbjct 2017 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1958
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||||| || || || ||||||||||| || ||||| ||||||
Sbjct 1957 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1898
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | ||||| || || |||||||| || || | || || || | || || |||
Sbjct 1897 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1838
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| |||||||| ||||| ||||||||||| || |||||
Sbjct 1837 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGAGGTGG 1791
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| |||||||| |||||||| |||||||||||||| || |
Sbjct 1789 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 1730
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || ||||||||||||||||| || ||||| |||||
Sbjct 1729 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 1670
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|| || | || || || || |||||||| ||||||| ||| ||
Sbjct 1669 CAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAAC 1626
Score = 141 bits (156), Expect = 1e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
||||| || ||||| || |||||||| || || || | |||| ||| | ||| | |||
Sbjct 1208 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 1149
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || || || ||||||||||| || || || || ||||| || || || || || ||
Sbjct 1148 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 1089
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||||| || |||| || || || | || || ||| | |||||||| ||||||||
Sbjct 1088 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTC 1029
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||||||||||| || |||||
Sbjct 1028 CATCTCGTCTTGCGTCTCCGAGGTGG 1003
Score = 134 bits (148), Expect = 2e-26
Identities = 124/157 (79%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || ||||| |||||||| |||||||| || |||||
Sbjct 2296 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 2237
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || |||||||||||||| || ||||| ||||||
Sbjct 2236 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 2177
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
|| || | || |||||||||||||| || || ||||
Sbjct 2176 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 2140
>seq809
Length=99032
Score = 172 bits (190), Expect = 6e-38
Identities = 656/1015 (65%), Gaps = 25/1015 (2%)
Strand=Plus/Plus
Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598
||||||||||||| ||| | ||| |||| || ||||| || || | | || ||
Sbjct 14336 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 14395
Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658
| || | || ||| || || || ||| || ||| |||||||| || || |||
Sbjct 14396 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 14455
Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718
|||| | || | | | |||| | | |||||||| || || | ||||
Sbjct 14456 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 14515
Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCG 80777
|| |||| || || ||||| || || | | | || || |||||| |||| || | |
Sbjct 14516 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTG 14575
Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837
| |||||| || | ||| || ||||| ||| || || ||||| ||||||
Sbjct 14576 CG-GGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14634
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTG--GTTCCCCTTC-ACAAA 80891
|||| |||| || || || || | ||||| || | ||||| || || ||
Sbjct 14635 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACGAA 14694
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
|| ||||| || || || ||||| || || || || || |||| | | | ||||
Sbjct 14695 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14754
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
| |||||| || || | ||| || || || ||||| |||| || ||||| |||||
Sbjct 14755 CATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 14814
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
|| |||| ||| ||||||||||| ||||| ||| ||| |||||| || | || |||
Sbjct 14815 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 14874
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||||||| ||||| || | || |||| || | ||||| | | | ||
Sbjct 14875 GATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTA 14934
Query 81132 CTTGGCGT-AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190
| | | |||||| || || | |||||| || || | || | |||||||||
Sbjct 14935 GCTCTCATAAAGCTT-TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGG 14993
Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250
|| ||||| || ||| || ||| || ||| |||||||||| || | ||
Sbjct 14994 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 15053
Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308
||||||||||| ||| || || || ||| || ||||||| | ||| ||||| |
Sbjct 15054 TCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCCT 15111
Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC- 81366
|| || | ||||| | | || || ||||| ||||| ||||| | ||||| | ||
Sbjct 15112 TAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC 15171
Query 81367 ----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422
| |||| | ||||| || | ||||| || || || |||| | | || |
Sbjct 15172 AGGACGCTTGTTA---CCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAG 15228
Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482
|||||| ||||| || | || | ||| || ||||| | || || ||||| || ||
Sbjct 15229 CATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACG 15288
Query 81483 CACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| ||| ||| || |||||| || ||||| | ||| || |||||||||||
Sbjct 15289 GATATTG-TGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACA 15342
>seq279
Length=236649
Score = 109 bits (120), Expect = 6e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| || |||||||| ||||||||||||||||| || | | || |||||| ||
Sbjct 36954 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 36895
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845
|| ||| | || ||||||| || ||| | |||||||||||| ||||| | |||| |||
Sbjct 36894 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGATGAG 36835
Query 64846 GGG 64848
|||
Sbjct 36834 GGG 36832
>seq187
Length=80745
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|||||||| ||||| || || || ||||||||||| || | ||| | ||| | |||
Sbjct 65996 CTTACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAG 65937
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| || || || ||||| ||||| | || || || ||
Sbjct 65936 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTCGCCGGA 65877
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
||||| |||||||| | | ||||| | |||||
Sbjct 65876 AAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 65842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570302479814320
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