Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq428 132 3e-26 >seq428 Length=224880 Score = 132 bits (146), Expect = 3e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| || | |||||||||| ||||||||| || || ||||| ||| Sbjct 1791 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1850 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||||||||| || ||||| || || || ||||| ||||| || || Sbjct 1851 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1910 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||||||| |||| || | || || | || || || ||| | || | Sbjct 1911 ATACCCTCCTTGTCTTGGATC-TTGGCCTTGACATTGTCGATGGTATCGCTCGAT-TCGA 1968 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| ||||| | ||||| || || || ||||| Sbjct 1969 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 2017 Score = 118 bits (130), Expect = 7e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| || | |||||||||| |||||||||||| || ||||| ||| Sbjct 1003 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1062 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||||||||| ||||| || || | || || || || || || Sbjct 1063 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1122 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 1123 ATACCCTCCTTGTCTTGGATCTT 1145 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| ||||| || || ||||| || || | || |||||||||||||| ||||| Sbjct 1320 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1379 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || || || || || || || | || |||||||| ||| || | |||||| | Sbjct 1380 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGTT 1438 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| ||| ||||| | || || || || ||||| || || || || Sbjct 1439 GTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 1498 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 1499 AAAGATCTGCAT 1510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725338462863