Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq428 102 6e-17
>seq428
Length=224880
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || | || ||||| || |||||||||||||| || || |
Sbjct 1510 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 1451
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || || |||| | || ||| ||||| |||||| | || || |||||
Sbjct 1450 GACACTATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 1392
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || ||||| || |||||||| || || | || ||| | ||| |||||
Sbjct 1391 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 1332
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || || ||
Sbjct 1331 CATCCAAAAGGAATCTAC 1314
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||||||||| || ||||| || || || ||||| || || |
Sbjct 2017 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1958
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || || ||||| || ||| | || || || ||
Sbjct 1957 GATACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCA 1899
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || ||||| || ||||| ||||||| || ||| | |||||||||
Sbjct 1898 GCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAA 1839
Query 23790 CATACAAAAAGAGTCCAC 23807
|| ||||| ||||||||
Sbjct 1838 TATCCAAAAGGAGTCCAC 1821
Score = 100 bits (110), Expect = 2e-16
Identities = 131/179 (73%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || ||||| || |||||||| || ||||| ||| |
Sbjct 1789 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 1730
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || ||| ||||| || ||| | || || || ||
Sbjct 1729 GACACCATTGACAATGTCAAGGC-GAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 1671
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
||| || || || || ||||| || |||||||| || | || ||||| |||||||
Sbjct 1670 ACAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTACA 1612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338005023244388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |