Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771 95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq428 105 2e-17 >seq428 Length=224880 Score = 105 bits (116), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| ||||| ||||| ||||| || |||||||||| | ||||| |||||||| Sbjct 1020 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 1079 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||||| || | | ||| || ||||| ||||| Sbjct 1080 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 1139 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || |||||| | || | | | || ||| || ||||||||||| || || Sbjct 1140 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 1196 Query 152072 TTTGCCCGTGAGA 152084 || ||||| ||| Sbjct 1197 CTTACCCGTAAGA 1209 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| ||||| || |||||||||||||| |||| | ||| | ||||| Sbjct 1298 GAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 1357 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || || || | | ||||| || | | || |||||||| || Sbjct 1358 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 1417 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | |||| || ||| ||||| ||||| ||||| Sbjct 1418 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGT 1477 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || |||| |||||| Sbjct 1478 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1510 Score = 96.9 bits (106), Expect = 8e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986 |||| |||| | ||| || |||||||| || || || || ||||| | | |||| Sbjct 2119 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 2178 Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046 |||| | | ||| || ||||| || || || || |||||| | || | | |||| | Sbjct 2179 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 2238 Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||| ||||||||||| ||||| || || ||||||||||| ||||| | ||||| Sbjct 2239 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 2296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 ||||||| | ||||||| ||||| || || ||||| ||||||||||| | | || Sbjct 1612 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 1669 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| | | ||| || ||||| || ||||| || |||||| | || | | |||| Sbjct 1670 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 1729 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| || || || |||||||| ||||| | |||||| Sbjct 1730 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153804375721481