Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001771
95.1_202017-04-19] 1,111 sequences; 18,377,618 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq428 154 4e-32
seq187 132 1e-25
>seq428
Length=224880
Score = 154 bits (170), Expect = 4e-32
Identities = 168/222 (76%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
||||| ||||| ||||| ||||| || ||||| || ||||| || || ||| |||
Sbjct 2014 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC--- 1958
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| |||||||| || ||||| ||||| || ||||| || || |||||||| ||||||
Sbjct 1957 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1898
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| ||| | || ||||||||||| || || ||||| || | |||||| ||||||| ||
Sbjct 1897 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1838
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||| || || || || ||||| || ||| | ||| ||
Sbjct 1837 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 1796
Score = 150 bits (166), Expect = 4e-31
Identities = 137/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || || || ||||| || || ||||| || |||
Sbjct 2293 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 2234
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || |||||||| |||||||||
Sbjct 2233 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAA 2174
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | ||||| || || || ||||| |||||||| |||||||| |||| ||
Sbjct 2173 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 2121
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || ||||| || ||||| ||||| || || || |||
Sbjct 1507 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCTGAC 1448
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| ||||| || ||||| || ||||||
Sbjct 1447 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 1388
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || ||||| || || ||||| | |||||| |||| || ||| ||
Sbjct 1387 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 1328
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| ||||| || || || ||||||
Sbjct 1327 CAAAAGGAATCTACCCTTCACCTTGTT 1301
Score = 141 bits (156), Expect = 2e-28
Identities = 135/173 (78%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| |||
Sbjct 1786 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 1727
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 1726 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 1667
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | |||||||||||||| || || || ||||| | ||| | | |||||
Sbjct 1666 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 1614
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 6/205 (3%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997
||| || || || || ||||| || || || ||| ||| || |||||||| || ||
Sbjct 1209 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAATGT 1153
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
||| ||||| || ||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 1152 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 1093
Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117
||||||||| || |||||||| | |||||| ||||||| || | ||||| || || ||
Sbjct 1092 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 1033
Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||| | ||| ||
Sbjct 1032 TCTCCATCTCGTCTTGCGTCTCCGA 1008
>seq187
Length=80745
Score = 132 bits (146), Expect = 1e-25
Identities = 123/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || ||||| || |||||||||||||| || ||| ||||||||||| || |||||
Sbjct 65997 TCTTACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAA 65938
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| |||||||| || || ||||| || ||||| || ||| | |||||||||||
Sbjct 65937 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTCGCCGG 65878
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| |||||||| || || ||||| ||| | || ||
Sbjct 65877 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 65842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203714065262534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |