Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 05.1_202017-04-19] 946 sequences; 18,403,683 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq658 147 2e-30 >seq658 Length=79865 Score = 147 bits (162), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| || || || || || || || | |||||||||| ||||| || || |||||| Sbjct 63894 ACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 63835 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | | | | ||||||||||| || | || || || ||||| ||||| ||| Sbjct 63834 CTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCT 63775 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| || || |||||| |||| || ||||| ||||| || || |||||||| || | Sbjct 63774 TCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTC 63715 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| |||||||||||||| | ||||||||||| || ||||||||||||| Sbjct 63714 TTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTC 63655 Query 117192 TGCTGTTCA 117200 | || |||| Sbjct 63654 TCCTCTTCA 63646 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||||||||| ||| | || |||||| | | | Sbjct 77841 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 77900 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 77901 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77960 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || || || || |||| || || || ||| ||||| Sbjct 77961 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 78020 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || ||||| || ||||| Sbjct 78021 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCG 78055 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || ||||| || || ||||| | || |||||| | | ||| | | | | | ||||| Sbjct 78650 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 78709 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| ||||| |||||| | || |||||||||||||||| ||| || Sbjct 78710 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78769 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || || | || || || ||| ||||| || || |||||| |||| || Sbjct 78770 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTC 78829 Query 40891 CATCTAGTGTTGCG 40904 ||||| || ||||| Sbjct 78830 CATCTCGTCTTGCG 78843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || || || | || Sbjct 77562 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77621 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 77622 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 77681 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||| | |||| || || || ||||| || || | | || ||| |||||||| Sbjct 77682 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 77739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213107532960