Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
05.1_202017-04-19] 946 sequences; 18,403,683 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq658 140 5e-28
seq481 127 3e-24
seq261 86.0 9e-12
>seq658
Length=79865
Score = 140 bits (154), Expect = 5e-28
Identities = 183/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || ||| ||| ||||||||||||| | || || ||||| || || || ||
Sbjct 63656 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63715
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 63716 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63775
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135
||| || || || || ||||| |||| |||| ||| || ||| | | ||||
Sbjct 63776 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63835
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 63836 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63895
Query 50196 AAAGAGATAGTTT 50208
|||||| |||||
Sbjct 63896 AAAGAGGAAGTTT 63908
>seq481
Length=111115
Score = 127 bits (140), Expect = 3e-24
Identities = 490/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
||| || || || || |||| ||| | | |||||| || ||| | |||||||| | |
Sbjct 14707 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14766
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978
||| || ||||| | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14767 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14826
Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 80037
| ||||| | | || |||||| || || ||||| ||||| || | ||| |
Sbjct 14827 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14884
Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097
| | ||||| ||||| || || | || ||||| | | || || || ||||| ||
Sbjct 14885 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14944
Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 14945 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 15004
Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 80216
|| ||||||||| |||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 15005 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 15063
Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 15064 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 15123
Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336
|| ||| ||||| ||||| | || || || ||||||||| | || |||
Sbjct 15124 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 15183
Query 80337 TCCCGCATTAAATA---------------------AG----------------------- 80352
|| || || || | ||
Sbjct 15184 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15243
Query 80353 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407
||||| ||||| || || || | | ||||||| ||||| || ||||| ||
Sbjct 15244 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15303
Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467
|| || || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15304 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15363
Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527
|| || |||||| ||| || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15364 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15423
Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15424 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15478
>seq261
Length=51033
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034
|||| ||||| || ||||| || | ||||| ||||| || ||||| ||||| | ||
Sbjct 13975 TGCATCCCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCT 13916
Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094
| ||| || | ||| || || | ||||| |||||||||||||| || ||||| ||
Sbjct 13915 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 13856
Query 50095 GCAAAGGCAACAAGTCT 50111
||||| || || |||||
Sbjct 13855 GCAAAAGCCACCAGTCT 13839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718260306471440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |