Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 05.1_202017-04-19] 946 sequences; 18,403,683 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq481 174 2e-38 seq658 122 1e-22 seq235 114 2e-20 >seq481 Length=111115 Score = 174 bits (192), Expect = 2e-38 Identities = 719/1120 (64%), Gaps = 33/1120 (3%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 14094 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 14153 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 || |||| || | |||| | |||||| || || ||||| || || ||||| | Sbjct 14154 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 14213 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239 | || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 14214 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA--- 14270 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || | || || ||||| |||||||| || |||| || ||||| | ||| || || | Sbjct 14271 TGAAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGT 14330 Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 | || || ||| ||| ||||| | || | ||| || | | || || || | Sbjct 14331 TGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTG 14387 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 | |||||||| || || || || ||||||| | | ||| | |||| || | | Sbjct 14388 TAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTA 14447 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 | | |||||| || | || || |||||||| |||| ||||| | || | Sbjct 14448 CGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAAT 14507 Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||| || ||||| ||||| | || || | | | ||||| || | || |||||| || Sbjct 14508 ACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTT 14565 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| | ||| |||||||||||| || || || || ||||| ||||| | Sbjct 14566 GGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGC 14625 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCC 116652 || ||| || || ||| | | || | |||| | || | | || || |||| || Sbjct 14626 CTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCC 14684 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712 | |||||| | || || ||||| |||||||| | | || | || || || Sbjct 14685 T-CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 14743 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || | ||||| | |||| ||| | ||| | || || ||||||||||| || Sbjct 14744 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 14803 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || | ||||||||| || |||| ||||| ||| || | || || | || || || Sbjct 14804 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTC 14863 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 | || || | ||||| | | ||| |||||||| || || || || | |||| Sbjct 14864 TTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAG 14923 Query 116893 G-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || | |||| |||| | || | || || | || || |||| | | Sbjct 14924 GCACCAGGACGCTTG---TTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCT 14980 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGT 117004 || ||||| |||||||| || | || | ||||| || || || || ||| | | Sbjct 14981 CGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CT 15038 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 | || | || || ||| ||||| | ||||||||| || || ||| ||||| || || | Sbjct 15039 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 15098 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | ||||| | ||||||| ||||| || |||||| |||| | || | |||||||| Sbjct 15099 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 15158 Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 | |||||||| || | || ||||| |||||||| || Sbjct 15159 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15198 >seq658 Length=79865 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 63660 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACCA 63719 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||| Sbjct 63720 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGAT 63778 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672 |||||||| || || |||| || |||||| Sbjct 63779 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 63812 >seq235 Length=11289 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 7925 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7866 Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 ||||||||||| |||| ||||| ||| |||| |||||||||| |||||| | Sbjct 7865 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 7807 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 7806 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 7748 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 7747 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7688 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | ||| | || || |||||| || | | | ||||| Sbjct 7687 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 7628 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 7627 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 7569 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 7568 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 7509 Query 176164 GTCGGCCA 176171 |||||||| Sbjct 7508 GTCGGCCA 7501 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 6775 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 6716 Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916 || || | ||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 6715 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 6656 Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 6655 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 6598 Query 176975 CCAGTAATTTTG 176986 |||| |||| || Sbjct 6597 CCAGAAATTCTG 6586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499945277360