Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 05.1_202017-04-19] 946 sequences; 18,403,683 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq658 118 2e-21 >seq658 Length=79865 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || || || | ||| | ||| | ||| || ||||| ||||| Sbjct 78070 ATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCG 78011 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | ||| || || || ||||| |||| ||| |||||||| Sbjct 78010 GAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGA 77951 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || ||||| || ||||| |||||| Sbjct 77950 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCG 77891 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||||||||| || || | ||||| | ||| || ||||| Sbjct 77890 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77841 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||||||||||| |||| || || ||||| || || ||||| || Sbjct 78502 TCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTG 78443 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || || || ||||| || ||||| || ||||| ||||| || Sbjct 78442 TCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATA 78383 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | || |||||||| Sbjct 78382 GTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125296766800